miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15716 3' -55.2 NC_004065.1 + 62379 0.66 0.971041
Target:  5'- cGGCGgGGGugGugGCGGCGGggguggCggCCGCg -3'
miRNA:   3'- cUCGCgCUCugU--UGUCGUCa-----Ga-GGCG- -5'
15716 3' -55.2 NC_004065.1 + 101532 0.66 0.971041
Target:  5'- cGGUG-GAGGCGGCAGCAGcagCgGCg -3'
miRNA:   3'- cUCGCgCUCUGUUGUCGUCagaGgCG- -5'
15716 3' -55.2 NC_004065.1 + 35109 0.66 0.971041
Target:  5'- cGAGCcgguguauCGAGACGGCGGCgccguGGUCUCgaUGCc -3'
miRNA:   3'- -CUCGc-------GCUCUGUUGUCG-----UCAGAG--GCG- -5'
15716 3' -55.2 NC_004065.1 + 18138 0.66 0.971041
Target:  5'- -cGcCGCGGGACGGgauguUGGCGGUaucgUCCGCg -3'
miRNA:   3'- cuC-GCGCUCUGUU-----GUCGUCAg---AGGCG- -5'
15716 3' -55.2 NC_004065.1 + 199946 0.66 0.971041
Target:  5'- cAGCGCGcGcuccGCcACGGCGGUC-CCGUc -3'
miRNA:   3'- cUCGCGCuC----UGuUGUCGUCAGaGGCG- -5'
15716 3' -55.2 NC_004065.1 + 56131 0.66 0.971041
Target:  5'- cGAGUGuUGAGGCGGCGGCGG-C-CCa- -3'
miRNA:   3'- -CUCGC-GCUCUGUUGUCGUCaGaGGcg -5'
15716 3' -55.2 NC_004065.1 + 115768 0.66 0.968141
Target:  5'- aAGCG-GAGGCGGCaggguuGGCGGUC-CCGg -3'
miRNA:   3'- cUCGCgCUCUGUUG------UCGUCAGaGGCg -5'
15716 3' -55.2 NC_004065.1 + 197095 0.66 0.968141
Target:  5'- -cGCGCGGGAgcCGAcCGGCccGUCUUCGUc -3'
miRNA:   3'- cuCGCGCUCU--GUU-GUCGu-CAGAGGCG- -5'
15716 3' -55.2 NC_004065.1 + 88446 0.66 0.968141
Target:  5'- cGAGUGCcGGGCGAgGGCgucgcaGGUCUUgCGCg -3'
miRNA:   3'- -CUCGCGcUCUGUUgUCG------UCAGAG-GCG- -5'
15716 3' -55.2 NC_004065.1 + 113190 0.66 0.968141
Target:  5'- aGGCGCauGGACGACAGCGG-CUgccCCGa -3'
miRNA:   3'- cUCGCGc-UCUGUUGUCGUCaGA---GGCg -5'
15716 3' -55.2 NC_004065.1 + 156288 0.66 0.968141
Target:  5'- aGGCGgGAGuagcgGCGGCAGCAGUggcgCCaGCa -3'
miRNA:   3'- cUCGCgCUC-----UGUUGUCGUCAga--GG-CG- -5'
15716 3' -55.2 NC_004065.1 + 113495 0.66 0.968141
Target:  5'- -cGCGUucGACAACGGCuacaaGGUCUuCUGCc -3'
miRNA:   3'- cuCGCGcuCUGUUGUCG-----UCAGA-GGCG- -5'
15716 3' -55.2 NC_004065.1 + 133047 0.66 0.968141
Target:  5'- cAGCGCGAcgGACGgccggcGCAGCAGgcgCgGCa -3'
miRNA:   3'- cUCGCGCU--CUGU------UGUCGUCagaGgCG- -5'
15716 3' -55.2 NC_004065.1 + 200869 0.66 0.96784
Target:  5'- gGGGCGCGGGcggugGCGAaucgucggucgugUAGCGGUaCUgCCGCu -3'
miRNA:   3'- -CUCGCGCUC-----UGUU-------------GUCGUCA-GA-GGCG- -5'
15716 3' -55.2 NC_004065.1 + 74046 0.66 0.96784
Target:  5'- gGAGUGCGAGACGA-GGCGGaggagcuUCUCgacggaugacuCGCg -3'
miRNA:   3'- -CUCGCGCUCUGUUgUCGUC-------AGAG-----------GCG- -5'
15716 3' -55.2 NC_004065.1 + 32464 0.66 0.96504
Target:  5'- -cGCGUGccGcCGACGGCAGUUuuUCUGCg -3'
miRNA:   3'- cuCGCGCu-CuGUUGUCGUCAG--AGGCG- -5'
15716 3' -55.2 NC_004065.1 + 26626 0.66 0.96504
Target:  5'- gGAGUGCGGcGACAGCgggAGCAgcGUC-CCGg -3'
miRNA:   3'- -CUCGCGCU-CUGUUG---UCGU--CAGaGGCg -5'
15716 3' -55.2 NC_004065.1 + 31006 0.66 0.96504
Target:  5'- gGGGUgGCGAGAUggagaggccgguGACGGCGaacgccaUCUCCGCg -3'
miRNA:   3'- -CUCG-CGCUCUG------------UUGUCGUc------AGAGGCG- -5'
15716 3' -55.2 NC_004065.1 + 119660 0.66 0.96504
Target:  5'- -uGCGCGAGAgguccCAGCcgcuGCGGUggCUCuCGCa -3'
miRNA:   3'- cuCGCGCUCU-----GUUGu---CGUCA--GAG-GCG- -5'
15716 3' -55.2 NC_004065.1 + 35272 0.66 0.96504
Target:  5'- cGGCGCGAGACGuuuCAGguGUUcgggGCg -3'
miRNA:   3'- cUCGCGCUCUGUu--GUCguCAGagg-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.