miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15716 5' -53.5 NC_004065.1 + 186507 0.66 0.988797
Target:  5'- cGCGCGGAccGGGucggauCUCCGUCUCUccaagugauguAUCg -3'
miRNA:   3'- -UGCGCCU--CUCuu----GAGGUAGAGG-----------UAGa -5'
15716 5' -53.5 NC_004065.1 + 127332 0.66 0.988797
Target:  5'- cGCGCGucaAGAGcGCUCCgGUCUgCGUCa -3'
miRNA:   3'- -UGCGCc--UCUCuUGAGG-UAGAgGUAGa -5'
15716 5' -53.5 NC_004065.1 + 145464 0.66 0.988797
Target:  5'- gGCGuCGGGGGcuGCcggUCCAUCugUCCAUCUa -3'
miRNA:   3'- -UGC-GCCUCUcuUG---AGGUAG--AGGUAGA- -5'
15716 5' -53.5 NC_004065.1 + 46217 0.66 0.987339
Target:  5'- cGCGCGGAGuccGGGCUCCGaaggaUCUaCCGc-- -3'
miRNA:   3'- -UGCGCCUCu--CUUGAGGU-----AGA-GGUaga -5'
15716 5' -53.5 NC_004065.1 + 134171 0.66 0.987339
Target:  5'- cACGCaG-GAcGGCUCCGUCUgCAUCa -3'
miRNA:   3'- -UGCGcCuCUcUUGAGGUAGAgGUAGa -5'
15716 5' -53.5 NC_004065.1 + 102305 0.66 0.985739
Target:  5'- aGCGUcGAGAGGcuGCUCgAgaaguUCUCCGUCg -3'
miRNA:   3'- -UGCGcCUCUCU--UGAGgU-----AGAGGUAGa -5'
15716 5' -53.5 NC_004065.1 + 12884 0.66 0.983988
Target:  5'- aGCGCGGAGAcuacCUCUAUCaUCGUCc -3'
miRNA:   3'- -UGCGCCUCUcuu-GAGGUAGaGGUAGa -5'
15716 5' -53.5 NC_004065.1 + 80466 0.66 0.983988
Target:  5'- uCGCGGcGAGGGCUCCAaCggCCuUCa -3'
miRNA:   3'- uGCGCCuCUCUUGAGGUaGa-GGuAGa -5'
15716 5' -53.5 NC_004065.1 + 103755 0.66 0.98208
Target:  5'- cGCGCGGcGGGGcCUCCGga-CCGUCg -3'
miRNA:   3'- -UGCGCCuCUCUuGAGGUagaGGUAGa -5'
15716 5' -53.5 NC_004065.1 + 29797 0.66 0.98208
Target:  5'- cAUGCGGAGuucGGcCUCgGUCUCCAa-- -3'
miRNA:   3'- -UGCGCCUCu--CUuGAGgUAGAGGUaga -5'
15716 5' -53.5 NC_004065.1 + 115541 0.67 0.975327
Target:  5'- gAUGCGGgcGGGcGAGCgUCUGUCUCUGUCUg -3'
miRNA:   3'- -UGCGCC--UCU-CUUG-AGGUAGAGGUAGA- -5'
15716 5' -53.5 NC_004065.1 + 183319 0.67 0.975327
Target:  5'- uCGCGGAacaGGGAUUUCGUCUCCGg-- -3'
miRNA:   3'- uGCGCCUc--UCUUGAGGUAGAGGUaga -5'
15716 5' -53.5 NC_004065.1 + 206787 0.68 0.966882
Target:  5'- -gGCGGAGGGAgggugucgggACUCU-UCUCUGUCg -3'
miRNA:   3'- ugCGCCUCUCU----------UGAGGuAGAGGUAGa -5'
15716 5' -53.5 NC_004065.1 + 129143 0.68 0.965619
Target:  5'- uGCGCGGcggaGGAGAACUaccuggggcgcagCCuggacgccgaacugAUCUCCAUCa -3'
miRNA:   3'- -UGCGCC----UCUCUUGA-------------GG--------------UAGAGGUAGa -5'
15716 5' -53.5 NC_004065.1 + 86949 0.68 0.963661
Target:  5'- -gGUGGAGAGGAcCUCCGaguUCUCCu--- -3'
miRNA:   3'- ugCGCCUCUCUU-GAGGU---AGAGGuaga -5'
15716 5' -53.5 NC_004065.1 + 141671 0.68 0.963661
Target:  5'- cCGCGGAcGAGAGCggucCCAuguacgauuUCUCCGcUCUg -3'
miRNA:   3'- uGCGCCU-CUCUUGa---GGU---------AGAGGU-AGA- -5'
15716 5' -53.5 NC_004065.1 + 142855 0.68 0.960227
Target:  5'- cGCGCGGuGcaGGGGCUCCuggacgaccccgGUCUCCAgagCUu -3'
miRNA:   3'- -UGCGCCuC--UCUUGAGG------------UAGAGGUa--GA- -5'
15716 5' -53.5 NC_004065.1 + 146720 0.68 0.960227
Target:  5'- cGCGCucgacGAcGAGAGCUCCGUCgcccaCAUCUa -3'
miRNA:   3'- -UGCGc----CU-CUCUUGAGGUAGag---GUAGA- -5'
15716 5' -53.5 NC_004065.1 + 199799 0.68 0.956576
Target:  5'- gACGCGGucGGuGAACUUgGcgaacUCUCCGUCg -3'
miRNA:   3'- -UGCGCC--UCuCUUGAGgU-----AGAGGUAGa -5'
15716 5' -53.5 NC_004065.1 + 181302 0.68 0.952703
Target:  5'- uACGaCGGAcacGAGGACgUCGUCUuCCAUCUg -3'
miRNA:   3'- -UGC-GCCU---CUCUUGaGGUAGA-GGUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.