miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15716 5' -53.5 NC_004065.1 + 175484 1.07 0.01027
Target:  5'- uACGCGGAGAGAACUCCAUCUCCAUCUc -3'
miRNA:   3'- -UGCGCCUCUCUUGAGGUAGAGGUAGA- -5'
15716 5' -53.5 NC_004065.1 + 139928 0.78 0.496815
Target:  5'- -aGCGGGuuGAACUUCGUCUCCGUCg -3'
miRNA:   3'- ugCGCCUcuCUUGAGGUAGAGGUAGa -5'
15716 5' -53.5 NC_004065.1 + 168662 0.77 0.585459
Target:  5'- gACGCGaGGAGAcCcCCAUCUCCGUCUu -3'
miRNA:   3'- -UGCGCcUCUCUuGaGGUAGAGGUAGA- -5'
15716 5' -53.5 NC_004065.1 + 160342 0.76 0.636135
Target:  5'- cUGCGGGGAgucGAugUCCGUCUCCuUCa -3'
miRNA:   3'- uGCGCCUCU---CUugAGGUAGAGGuAGa -5'
15716 5' -53.5 NC_004065.1 + 35602 0.75 0.666562
Target:  5'- gGCGCccGGGGAGAACUCCGUCUggaacgcccgCCGcUCUg -3'
miRNA:   3'- -UGCG--CCUCUCUUGAGGUAGA----------GGU-AGA- -5'
15716 5' -53.5 NC_004065.1 + 78236 0.74 0.716608
Target:  5'- aGCGCGGAGAGGACgUCCAUg-CCGcgCUg -3'
miRNA:   3'- -UGCGCCUCUCUUG-AGGUAgaGGUa-GA- -5'
15716 5' -53.5 NC_004065.1 + 19853 0.72 0.810236
Target:  5'- cCGCGGAGu--ACUCCAUCUUCuUCa -3'
miRNA:   3'- uGCGCCUCucuUGAGGUAGAGGuAGa -5'
15716 5' -53.5 NC_004065.1 + 198995 0.72 0.810236
Target:  5'- uACGCGGAGAuGGCguucgCCGucaccggccUCUCCAUCUc -3'
miRNA:   3'- -UGCGCCUCUcUUGa----GGU---------AGAGGUAGA- -5'
15716 5' -53.5 NC_004065.1 + 169561 0.72 0.835613
Target:  5'- gGCGCGGcagucGAGAGCUCCGUCgacgugguccUCgGUCUc -3'
miRNA:   3'- -UGCGCCu----CUCUUGAGGUAG----------AGgUAGA- -5'
15716 5' -53.5 NC_004065.1 + 195804 0.72 0.835613
Target:  5'- cCGCGGAGAGAccacauccuuCUCUcUCUCUGUCUg -3'
miRNA:   3'- uGCGCCUCUCUu---------GAGGuAGAGGUAGA- -5'
15716 5' -53.5 NC_004065.1 + 226401 0.71 0.860112
Target:  5'- aGCGCGGAGgucGGGACgaagaaucugggcggCCGUCUCCAg-- -3'
miRNA:   3'- -UGCGCCUC---UCUUGa--------------GGUAGAGGUaga -5'
15716 5' -53.5 NC_004065.1 + 186158 0.7 0.913399
Target:  5'- cCGUGGAGGccgccaccGAACUCCAcggcgUCUCCGcUCUg -3'
miRNA:   3'- uGCGCCUCU--------CUUGAGGU-----AGAGGU-AGA- -5'
15716 5' -53.5 NC_004065.1 + 223912 0.69 0.934923
Target:  5'- -gGCGGcGuGAugguucCUCCAUCUCCGUCc -3'
miRNA:   3'- ugCGCCuCuCUu-----GAGGUAGAGGUAGa -5'
15716 5' -53.5 NC_004065.1 + 197095 0.68 0.948604
Target:  5'- cGCGCGG-GAGccgaccGGC-CCGUCUUCGUCg -3'
miRNA:   3'- -UGCGCCuCUC------UUGaGGUAGAGGUAGa -5'
15716 5' -53.5 NC_004065.1 + 30677 0.68 0.948604
Target:  5'- gACGCGGAGAgcaagGAGCuggUCCGUCgcgaCGUCg -3'
miRNA:   3'- -UGCGCCUCU-----CUUG---AGGUAGag--GUAGa -5'
15716 5' -53.5 NC_004065.1 + 181302 0.68 0.952703
Target:  5'- uACGaCGGAcacGAGGACgUCGUCUuCCAUCUg -3'
miRNA:   3'- -UGC-GCCU---CUCUUGaGGUAGA-GGUAGA- -5'
15716 5' -53.5 NC_004065.1 + 199799 0.68 0.956576
Target:  5'- gACGCGGucGGuGAACUUgGcgaacUCUCCGUCg -3'
miRNA:   3'- -UGCGCC--UCuCUUGAGgU-----AGAGGUAGa -5'
15716 5' -53.5 NC_004065.1 + 146720 0.68 0.960227
Target:  5'- cGCGCucgacGAcGAGAGCUCCGUCgcccaCAUCUa -3'
miRNA:   3'- -UGCGc----CU-CUCUUGAGGUAGag---GUAGA- -5'
15716 5' -53.5 NC_004065.1 + 142855 0.68 0.960227
Target:  5'- cGCGCGGuGcaGGGGCUCCuggacgaccccgGUCUCCAgagCUu -3'
miRNA:   3'- -UGCGCCuC--UCUUGAGG------------UAGAGGUa--GA- -5'
15716 5' -53.5 NC_004065.1 + 86949 0.68 0.963661
Target:  5'- -gGUGGAGAGGAcCUCCGaguUCUCCu--- -3'
miRNA:   3'- ugCGCCUCUCUU-GAGGU---AGAGGuaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.