Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 197095 | 0.68 | 0.948604 |
Target: 5'- cGCGCGG-GAGccgaccGGC-CCGUCUUCGUCg -3' miRNA: 3'- -UGCGCCuCUC------UUGaGGUAGAGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 30677 | 0.68 | 0.948604 |
Target: 5'- gACGCGGAGAgcaagGAGCuggUCCGUCgcgaCGUCg -3' miRNA: 3'- -UGCGCCUCU-----CUUG---AGGUAGag--GUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 223912 | 0.69 | 0.934923 |
Target: 5'- -gGCGGcGuGAugguucCUCCAUCUCCGUCc -3' miRNA: 3'- ugCGCCuCuCUu-----GAGGUAGAGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 186158 | 0.7 | 0.913399 |
Target: 5'- cCGUGGAGGccgccaccGAACUCCAcggcgUCUCCGcUCUg -3' miRNA: 3'- uGCGCCUCU--------CUUGAGGU-----AGAGGU-AGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 226401 | 0.71 | 0.860112 |
Target: 5'- aGCGCGGAGgucGGGACgaagaaucugggcggCCGUCUCCAg-- -3' miRNA: 3'- -UGCGCCUC---UCUUGa--------------GGUAGAGGUaga -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 169561 | 0.72 | 0.835613 |
Target: 5'- gGCGCGGcagucGAGAGCUCCGUCgacgugguccUCgGUCUc -3' miRNA: 3'- -UGCGCCu----CUCUUGAGGUAG----------AGgUAGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 195804 | 0.72 | 0.835613 |
Target: 5'- cCGCGGAGAGAccacauccuuCUCUcUCUCUGUCUg -3' miRNA: 3'- uGCGCCUCUCUu---------GAGGuAGAGGUAGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 19853 | 0.72 | 0.810236 |
Target: 5'- cCGCGGAGu--ACUCCAUCUUCuUCa -3' miRNA: 3'- uGCGCCUCucuUGAGGUAGAGGuAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 198995 | 0.72 | 0.810236 |
Target: 5'- uACGCGGAGAuGGCguucgCCGucaccggccUCUCCAUCUc -3' miRNA: 3'- -UGCGCCUCUcUUGa----GGU---------AGAGGUAGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 78236 | 0.74 | 0.716608 |
Target: 5'- aGCGCGGAGAGGACgUCCAUg-CCGcgCUg -3' miRNA: 3'- -UGCGCCUCUCUUG-AGGUAgaGGUa-GA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 35602 | 0.75 | 0.666562 |
Target: 5'- gGCGCccGGGGAGAACUCCGUCUggaacgcccgCCGcUCUg -3' miRNA: 3'- -UGCG--CCUCUCUUGAGGUAGA----------GGU-AGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 160342 | 0.76 | 0.636135 |
Target: 5'- cUGCGGGGAgucGAugUCCGUCUCCuUCa -3' miRNA: 3'- uGCGCCUCU---CUugAGGUAGAGGuAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 168662 | 0.77 | 0.585459 |
Target: 5'- gACGCGaGGAGAcCcCCAUCUCCGUCUu -3' miRNA: 3'- -UGCGCcUCUCUuGaGGUAGAGGUAGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 139928 | 0.78 | 0.496815 |
Target: 5'- -aGCGGGuuGAACUUCGUCUCCGUCg -3' miRNA: 3'- ugCGCCUcuCUUGAGGUAGAGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 175484 | 1.07 | 0.01027 |
Target: 5'- uACGCGGAGAGAACUCCAUCUCCAUCUc -3' miRNA: 3'- -UGCGCCUCUCUUGAGGUAGAGGUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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