Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 12884 | 0.66 | 0.983988 |
Target: 5'- aGCGCGGAGAcuacCUCUAUCaUCGUCc -3' miRNA: 3'- -UGCGCCUCUcuu-GAGGUAGaGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 19853 | 0.72 | 0.810236 |
Target: 5'- cCGCGGAGu--ACUCCAUCUUCuUCa -3' miRNA: 3'- uGCGCCUCucuUGAGGUAGAGGuAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 29797 | 0.66 | 0.98208 |
Target: 5'- cAUGCGGAGuucGGcCUCgGUCUCCAa-- -3' miRNA: 3'- -UGCGCCUCu--CUuGAGgUAGAGGUaga -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 30677 | 0.68 | 0.948604 |
Target: 5'- gACGCGGAGAgcaagGAGCuggUCCGUCgcgaCGUCg -3' miRNA: 3'- -UGCGCCUCU-----CUUG---AGGUAGag--GUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 35602 | 0.75 | 0.666562 |
Target: 5'- gGCGCccGGGGAGAACUCCGUCUggaacgcccgCCGcUCUg -3' miRNA: 3'- -UGCG--CCUCUCUUGAGGUAGA----------GGU-AGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 46217 | 0.66 | 0.987339 |
Target: 5'- cGCGCGGAGuccGGGCUCCGaaggaUCUaCCGc-- -3' miRNA: 3'- -UGCGCCUCu--CUUGAGGU-----AGA-GGUaga -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 78236 | 0.74 | 0.716608 |
Target: 5'- aGCGCGGAGAGGACgUCCAUg-CCGcgCUg -3' miRNA: 3'- -UGCGCCUCUCUUG-AGGUAgaGGUa-GA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 80466 | 0.66 | 0.983988 |
Target: 5'- uCGCGGcGAGGGCUCCAaCggCCuUCa -3' miRNA: 3'- uGCGCCuCUCUUGAGGUaGa-GGuAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 86949 | 0.68 | 0.963661 |
Target: 5'- -gGUGGAGAGGAcCUCCGaguUCUCCu--- -3' miRNA: 3'- ugCGCCUCUCUU-GAGGU---AGAGGuaga -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 102305 | 0.66 | 0.985739 |
Target: 5'- aGCGUcGAGAGGcuGCUCgAgaaguUCUCCGUCg -3' miRNA: 3'- -UGCGcCUCUCU--UGAGgU-----AGAGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 103755 | 0.66 | 0.98208 |
Target: 5'- cGCGCGGcGGGGcCUCCGga-CCGUCg -3' miRNA: 3'- -UGCGCCuCUCUuGAGGUagaGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 115541 | 0.67 | 0.975327 |
Target: 5'- gAUGCGGgcGGGcGAGCgUCUGUCUCUGUCUg -3' miRNA: 3'- -UGCGCC--UCU-CUUG-AGGUAGAGGUAGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 127332 | 0.66 | 0.988797 |
Target: 5'- cGCGCGucaAGAGcGCUCCgGUCUgCGUCa -3' miRNA: 3'- -UGCGCc--UCUCuUGAGG-UAGAgGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 129143 | 0.68 | 0.965619 |
Target: 5'- uGCGCGGcggaGGAGAACUaccuggggcgcagCCuggacgccgaacugAUCUCCAUCa -3' miRNA: 3'- -UGCGCC----UCUCUUGA-------------GG--------------UAGAGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 134171 | 0.66 | 0.987339 |
Target: 5'- cACGCaG-GAcGGCUCCGUCUgCAUCa -3' miRNA: 3'- -UGCGcCuCUcUUGAGGUAGAgGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 139928 | 0.78 | 0.496815 |
Target: 5'- -aGCGGGuuGAACUUCGUCUCCGUCg -3' miRNA: 3'- ugCGCCUcuCUUGAGGUAGAGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 141671 | 0.68 | 0.963661 |
Target: 5'- cCGCGGAcGAGAGCggucCCAuguacgauuUCUCCGcUCUg -3' miRNA: 3'- uGCGCCU-CUCUUGa---GGU---------AGAGGU-AGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 142855 | 0.68 | 0.960227 |
Target: 5'- cGCGCGGuGcaGGGGCUCCuggacgaccccgGUCUCCAgagCUu -3' miRNA: 3'- -UGCGCCuC--UCUUGAGG------------UAGAGGUa--GA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 145464 | 0.66 | 0.988797 |
Target: 5'- gGCGuCGGGGGcuGCcggUCCAUCugUCCAUCUa -3' miRNA: 3'- -UGC-GCCUCUcuUG---AGGUAG--AGGUAGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 146720 | 0.68 | 0.960227 |
Target: 5'- cGCGCucgacGAcGAGAGCUCCGUCgcccaCAUCUa -3' miRNA: 3'- -UGCGc----CU-CUCUUGAGGUAGag---GUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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