Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 35602 | 0.75 | 0.666562 |
Target: 5'- gGCGCccGGGGAGAACUCCGUCUggaacgcccgCCGcUCUg -3' miRNA: 3'- -UGCG--CCUCUCUUGAGGUAGA----------GGU-AGA- -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 168662 | 0.77 | 0.585459 |
Target: 5'- gACGCGaGGAGAcCcCCAUCUCCGUCUu -3' miRNA: 3'- -UGCGCcUCUCUuGaGGUAGAGGUAGA- -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 139928 | 0.78 | 0.496815 |
Target: 5'- -aGCGGGuuGAACUUCGUCUCCGUCg -3' miRNA: 3'- ugCGCCUcuCUUGAGGUAGAGGUAGa -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 175484 | 1.07 | 0.01027 |
Target: 5'- uACGCGGAGAGAACUCCAUCUCCAUCUc -3' miRNA: 3'- -UGCGCCUCUCUUGAGGUAGAGGUAGA- -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 30677 | 0.68 | 0.948604 |
Target: 5'- gACGCGGAGAgcaagGAGCuggUCCGUCgcgaCGUCg -3' miRNA: 3'- -UGCGCCUCU-----CUUG---AGGUAGag--GUAGa -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 223912 | 0.69 | 0.934923 |
Target: 5'- -gGCGGcGuGAugguucCUCCAUCUCCGUCc -3' miRNA: 3'- ugCGCCuCuCUu-----GAGGUAGAGGUAGa -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 186507 | 0.66 | 0.988797 |
Target: 5'- cGCGCGGAccGGGucggauCUCCGUCUCUccaagugauguAUCg -3' miRNA: 3'- -UGCGCCU--CUCuu----GAGGUAGAGG-----------UAGa -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 183319 | 0.67 | 0.975327 |
Target: 5'- uCGCGGAacaGGGAUUUCGUCUCCGg-- -3' miRNA: 3'- uGCGCCUc--UCUUGAGGUAGAGGUaga -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 141671 | 0.68 | 0.963661 |
Target: 5'- cCGCGGAcGAGAGCggucCCAuguacgauuUCUCCGcUCUg -3' miRNA: 3'- uGCGCCU-CUCUUGa---GGU---------AGAGGU-AGA- -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 86949 | 0.68 | 0.963661 |
Target: 5'- -gGUGGAGAGGAcCUCCGaguUCUCCu--- -3' miRNA: 3'- ugCGCCUCUCUU-GAGGU---AGAGGuaga -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 197095 | 0.68 | 0.948604 |
Target: 5'- cGCGCGG-GAGccgaccGGC-CCGUCUUCGUCg -3' miRNA: 3'- -UGCGCCuCUC------UUGaGGUAGAGGUAGa -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 78236 | 0.74 | 0.716608 |
Target: 5'- aGCGCGGAGAGGACgUCCAUg-CCGcgCUg -3' miRNA: 3'- -UGCGCCUCUCUUG-AGGUAgaGGUa-GA- -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 129143 | 0.68 | 0.965619 |
Target: 5'- uGCGCGGcggaGGAGAACUaccuggggcgcagCCuggacgccgaacugAUCUCCAUCa -3' miRNA: 3'- -UGCGCC----UCUCUUGA-------------GG--------------UAGAGGUAGa -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 19853 | 0.72 | 0.810236 |
Target: 5'- cCGCGGAGu--ACUCCAUCUUCuUCa -3' miRNA: 3'- uGCGCCUCucuUGAGGUAGAGGuAGa -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 181302 | 0.68 | 0.952703 |
Target: 5'- uACGaCGGAcacGAGGACgUCGUCUuCCAUCUg -3' miRNA: 3'- -UGC-GCCU---CUCUUGaGGUAGA-GGUAGA- -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 206787 | 0.68 | 0.966882 |
Target: 5'- -gGCGGAGGGAgggugucgggACUCU-UCUCUGUCg -3' miRNA: 3'- ugCGCCUCUCU----------UGAGGuAGAGGUAGa -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 169561 | 0.72 | 0.835613 |
Target: 5'- gGCGCGGcagucGAGAGCUCCGUCgacgugguccUCgGUCUc -3' miRNA: 3'- -UGCGCCu----CUCUUGAGGUAG----------AGgUAGA- -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 160342 | 0.76 | 0.636135 |
Target: 5'- cUGCGGGGAgucGAugUCCGUCUCCuUCa -3' miRNA: 3'- uGCGCCUCU---CUugAGGUAGAGGuAGa -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 46217 | 0.66 | 0.987339 |
Target: 5'- cGCGCGGAGuccGGGCUCCGaaggaUCUaCCGc-- -3' miRNA: 3'- -UGCGCCUCu--CUUGAGGU-----AGA-GGUaga -5' |
|||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 134171 | 0.66 | 0.987339 |
Target: 5'- cACGCaG-GAcGGCUCCGUCUgCAUCa -3' miRNA: 3'- -UGCGcCuCUcUUGAGGUAGAgGUAGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home