Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15716 | 5' | -53.5 | NC_004065.1 | + | 226401 | 0.71 | 0.860112 |
Target: 5'- aGCGCGGAGgucGGGACgaagaaucugggcggCCGUCUCCAg-- -3' miRNA: 3'- -UGCGCCUC---UCUUGa--------------GGUAGAGGUaga -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 186158 | 0.7 | 0.913399 |
Target: 5'- cCGUGGAGGccgccaccGAACUCCAcggcgUCUCCGcUCUg -3' miRNA: 3'- uGCGCCUCU--------CUUGAGGU-----AGAGGU-AGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 199799 | 0.68 | 0.956576 |
Target: 5'- gACGCGGucGGuGAACUUgGcgaacUCUCCGUCg -3' miRNA: 3'- -UGCGCC--UCuCUUGAGgU-----AGAGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 142855 | 0.68 | 0.960227 |
Target: 5'- cGCGCGGuGcaGGGGCUCCuggacgaccccgGUCUCCAgagCUu -3' miRNA: 3'- -UGCGCCuC--UCUUGAGG------------UAGAGGUa--GA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 146720 | 0.68 | 0.960227 |
Target: 5'- cGCGCucgacGAcGAGAGCUCCGUCgcccaCAUCUa -3' miRNA: 3'- -UGCGc----CU-CUCUUGAGGUAGag---GUAGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 115541 | 0.67 | 0.975327 |
Target: 5'- gAUGCGGgcGGGcGAGCgUCUGUCUCUGUCUg -3' miRNA: 3'- -UGCGCC--UCU-CUUG-AGGUAGAGGUAGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 103755 | 0.66 | 0.98208 |
Target: 5'- cGCGCGGcGGGGcCUCCGga-CCGUCg -3' miRNA: 3'- -UGCGCCuCUCUuGAGGUagaGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 29797 | 0.66 | 0.98208 |
Target: 5'- cAUGCGGAGuucGGcCUCgGUCUCCAa-- -3' miRNA: 3'- -UGCGCCUCu--CUuGAGgUAGAGGUaga -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 80466 | 0.66 | 0.983988 |
Target: 5'- uCGCGGcGAGGGCUCCAaCggCCuUCa -3' miRNA: 3'- uGCGCCuCUCUUGAGGUaGa-GGuAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 12884 | 0.66 | 0.983988 |
Target: 5'- aGCGCGGAGAcuacCUCUAUCaUCGUCc -3' miRNA: 3'- -UGCGCCUCUcuu-GAGGUAGaGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 102305 | 0.66 | 0.985739 |
Target: 5'- aGCGUcGAGAGGcuGCUCgAgaaguUCUCCGUCg -3' miRNA: 3'- -UGCGcCUCUCU--UGAGgU-----AGAGGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 134171 | 0.66 | 0.987339 |
Target: 5'- cACGCaG-GAcGGCUCCGUCUgCAUCa -3' miRNA: 3'- -UGCGcCuCUcUUGAGGUAGAgGUAGa -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 46217 | 0.66 | 0.987339 |
Target: 5'- cGCGCGGAGuccGGGCUCCGaaggaUCUaCCGc-- -3' miRNA: 3'- -UGCGCCUCu--CUUGAGGU-----AGA-GGUaga -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 145464 | 0.66 | 0.988797 |
Target: 5'- gGCGuCGGGGGcuGCcggUCCAUCugUCCAUCUa -3' miRNA: 3'- -UGC-GCCUCUcuUG---AGGUAG--AGGUAGA- -5' |
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15716 | 5' | -53.5 | NC_004065.1 | + | 198995 | 0.72 | 0.810236 |
Target: 5'- uACGCGGAGAuGGCguucgCCGucaccggccUCUCCAUCUc -3' miRNA: 3'- -UGCGCCUCUcUUGa----GGU---------AGAGGUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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