miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15717 3' -57 NC_004065.1 + 75046 0.66 0.923878
Target:  5'- gGCUGUACCU-CUUgaagacguGCuCGAG-GCGGCu -3'
miRNA:   3'- aCGACGUGGAcGAG--------UG-GUUCaCGCCG- -5'
15717 3' -57 NC_004065.1 + 178528 0.66 0.923878
Target:  5'- cUGCUGCugCUGUU-GCUucuUGUGGCu -3'
miRNA:   3'- -ACGACGugGACGAgUGGuucACGCCG- -5'
15717 3' -57 NC_004065.1 + 125588 0.66 0.923878
Target:  5'- gUGCUuCGCCUcGUUgGCCGuGcGCGGCg -3'
miRNA:   3'- -ACGAcGUGGA-CGAgUGGUuCaCGCCG- -5'
15717 3' -57 NC_004065.1 + 550 0.66 0.923878
Target:  5'- gUGCgaGCGCCcccUGUUCGCgCAacgGGgcugGCGGCa -3'
miRNA:   3'- -ACGa-CGUGG---ACGAGUG-GU---UCa---CGCCG- -5'
15717 3' -57 NC_004065.1 + 198292 0.66 0.918415
Target:  5'- gGCggaUGCACCcGCUCAU---GUGCGGg -3'
miRNA:   3'- aCG---ACGUGGaCGAGUGguuCACGCCg -5'
15717 3' -57 NC_004065.1 + 171667 0.66 0.918415
Target:  5'- -cCUGCACCaggcGCUCugUAAcuGUGUGGUc -3'
miRNA:   3'- acGACGUGGa---CGAGugGUU--CACGCCG- -5'
15717 3' -57 NC_004065.1 + 65412 0.66 0.917856
Target:  5'- gGCUGCgaGCCUcuuccccGC-CugCGAGcgGCGGCc -3'
miRNA:   3'- aCGACG--UGGA-------CGaGugGUUCa-CGCCG- -5'
15717 3' -57 NC_004065.1 + 55945 0.66 0.912723
Target:  5'- aGCcGCACUUGgUgAgCAGGUGCaGCa -3'
miRNA:   3'- aCGaCGUGGACgAgUgGUUCACGcCG- -5'
15717 3' -57 NC_004065.1 + 105408 0.66 0.912723
Target:  5'- cGCUGaccaacaACCcgcUGCUgGCCGcgcuGGUGCGGg -3'
miRNA:   3'- aCGACg------UGG---ACGAgUGGU----UCACGCCg -5'
15717 3' -57 NC_004065.1 + 198002 0.66 0.912723
Target:  5'- gUGCggGCACCugggcaUGCUCuCCAGacgcuccuUGCGGCg -3'
miRNA:   3'- -ACGa-CGUGG------ACGAGuGGUUc-------ACGCCG- -5'
15717 3' -57 NC_004065.1 + 105943 0.66 0.912141
Target:  5'- gGcCUGCACCcggGCUUcgcgcugACCGuGGUGCGGa -3'
miRNA:   3'- aC-GACGUGGa--CGAG-------UGGU-UCACGCCg -5'
15717 3' -57 NC_004065.1 + 88427 0.66 0.906802
Target:  5'- aGUUcGcCACCUcGUcCACCGAGUGCcgGGCg -3'
miRNA:   3'- aCGA-C-GUGGA-CGaGUGGUUCACG--CCG- -5'
15717 3' -57 NC_004065.1 + 99934 0.66 0.906802
Target:  5'- gGCggGCGCCgaacgGCaUCGCCGuAGUcgaccaccgccGCGGCg -3'
miRNA:   3'- aCGa-CGUGGa----CG-AGUGGU-UCA-----------CGCCG- -5'
15717 3' -57 NC_004065.1 + 122219 0.66 0.906198
Target:  5'- gGCUGgugGCCcGCUCgcccacgGCCAAGUauccggGCGGCg -3'
miRNA:   3'- aCGACg--UGGaCGAG-------UGGUUCA------CGCCG- -5'
15717 3' -57 NC_004065.1 + 119099 0.66 0.900656
Target:  5'- cGCggaACCcGUUCACCGGGaGCGGUu -3'
miRNA:   3'- aCGacgUGGaCGAGUGGUUCaCGCCG- -5'
15717 3' -57 NC_004065.1 + 64256 0.66 0.900656
Target:  5'- gUGCggGUGCCUGgaCGCguGGUGCcGCg -3'
miRNA:   3'- -ACGa-CGUGGACgaGUGguUCACGcCG- -5'
15717 3' -57 NC_004065.1 + 195518 0.66 0.900656
Target:  5'- gGCgGUGCCgacUUCGCCAAGUGguUGGCg -3'
miRNA:   3'- aCGaCGUGGac-GAGUGGUUCAC--GCCG- -5'
15717 3' -57 NC_004065.1 + 5772 0.66 0.90003
Target:  5'- aGCUGUugCUuccccucccGCUCGCCGGGcGCaggaggaaaaaaaGGCg -3'
miRNA:   3'- aCGACGugGA---------CGAGUGGUUCaCG-------------CCG- -5'
15717 3' -57 NC_004065.1 + 20940 0.67 0.896861
Target:  5'- gGCggGCGCaCUGgucCUCACCAcugugaagacgcaggAGUaGCGGCg -3'
miRNA:   3'- aCGa-CGUG-GAC---GAGUGGU---------------UCA-CGCCG- -5'
15717 3' -57 NC_004065.1 + 18945 0.67 0.894287
Target:  5'- gGUcaUGCAUCuguUGCUCugCAccugGGUGUGGUg -3'
miRNA:   3'- aCG--ACGUGG---ACGAGugGU----UCACGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.