miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15717 3' -57 NC_004065.1 + 61390 0.67 0.866643
Target:  5'- cGCcGCGCCgGCUcCGCCc---GCGGCa -3'
miRNA:   3'- aCGaCGUGGaCGA-GUGGuucaCGCCG- -5'
15717 3' -57 NC_004065.1 + 202646 0.67 0.873871
Target:  5'- cGCUGCugCUGCUgCugC---UGcCGGCu -3'
miRNA:   3'- aCGACGugGACGA-GugGuucAC-GCCG- -5'
15717 3' -57 NC_004065.1 + 79568 0.67 0.887697
Target:  5'- aGCgGCGCUUcCUgGCCGAG-GUGGCc -3'
miRNA:   3'- aCGaCGUGGAcGAgUGGUUCaCGCCG- -5'
15717 3' -57 NC_004065.1 + 213160 0.67 0.873871
Target:  5'- cUGCUGUuCUgGCUCGCCcucgccGUGCGuGCg -3'
miRNA:   3'- -ACGACGuGGaCGAGUGGuu----CACGC-CG- -5'
15717 3' -57 NC_004065.1 + 36170 0.67 0.887697
Target:  5'- cGCUGUgucaGCC-GCUCGCgGGGggGCGcGCa -3'
miRNA:   3'- aCGACG----UGGaCGAGUGgUUCa-CGC-CG- -5'
15717 3' -57 NC_004065.1 + 107498 0.67 0.873871
Target:  5'- cUGCUGUcgcucgACC-GCUCGCaCGAGgaggugcgcGCGGCg -3'
miRNA:   3'- -ACGACG------UGGaCGAGUG-GUUCa--------CGCCG- -5'
15717 3' -57 NC_004065.1 + 118471 0.67 0.873871
Target:  5'- ---gGCGCC-GCUCACgAAGUGCcaGGUg -3'
miRNA:   3'- acgaCGUGGaCGAGUGgUUCACG--CCG- -5'
15717 3' -57 NC_004065.1 + 68202 0.67 0.858458
Target:  5'- cGCUGUacaagacuuACCUGuCUCAgCGGGUGagcgcguCGGCg -3'
miRNA:   3'- aCGACG---------UGGAC-GAGUgGUUCAC-------GCCG- -5'
15717 3' -57 NC_004065.1 + 19163 0.67 0.87387
Target:  5'- aUGCUGCcgauGCC-GCUUucuGCCGAG-GCGGg -3'
miRNA:   3'- -ACGACG----UGGaCGAG---UGGUUCaCGCCg -5'
15717 3' -57 NC_004065.1 + 69407 0.67 0.859212
Target:  5'- aGCUGCcgaCgGggCGCCAGGUGCGcGCc -3'
miRNA:   3'- aCGACGug-GaCgaGUGGUUCACGC-CG- -5'
15717 3' -57 NC_004065.1 + 77111 0.67 0.88089
Target:  5'- cGCUGCaACCUGUgcgcgaucgUCAgCAucugccUGCGGCg -3'
miRNA:   3'- aCGACG-UGGACG---------AGUgGUuc----ACGCCG- -5'
15717 3' -57 NC_004065.1 + 77169 0.67 0.88089
Target:  5'- gGCUGCuggacuaCUGCUUccuguGCCAcaAGUgcGCGGCg -3'
miRNA:   3'- aCGACGug-----GACGAG-----UGGU--UCA--CGCCG- -5'
15717 3' -57 NC_004065.1 + 116714 0.67 0.88089
Target:  5'- gUGgUGCGCC-GuCUCGCUggGUcGCGGg -3'
miRNA:   3'- -ACgACGUGGaC-GAGUGGuuCA-CGCCg -5'
15717 3' -57 NC_004065.1 + 18945 0.67 0.894287
Target:  5'- gGUcaUGCAUCuguUGCUCugCAccugGGUGUGGUg -3'
miRNA:   3'- aCG--ACGUGG---ACGAGugGU----UCACGCCG- -5'
15717 3' -57 NC_004065.1 + 20940 0.67 0.896861
Target:  5'- gGCggGCGCaCUGgucCUCACCAcugugaagacgcaggAGUaGCGGCg -3'
miRNA:   3'- aCGa-CGUG-GAC---GAGUGGU---------------UCA-CGCCG- -5'
15717 3' -57 NC_004065.1 + 44146 0.67 0.87387
Target:  5'- ---cGCgACCaGCUCACCAaacGGUGCaGCg -3'
miRNA:   3'- acgaCG-UGGaCGAGUGGU---UCACGcCG- -5'
15717 3' -57 NC_004065.1 + 80377 0.67 0.88089
Target:  5'- cGCUGCggcgcgugcaggGCCUGCcgacggCGCCG-GUGaCGGUg -3'
miRNA:   3'- aCGACG------------UGGACGa-----GUGGUuCAC-GCCG- -5'
15717 3' -57 NC_004065.1 + 173423 0.67 0.866643
Target:  5'- cGCgGcCGCCUGCUCGCuCGAcgaCGGCa -3'
miRNA:   3'- aCGaC-GUGGACGAGUG-GUUcacGCCG- -5'
15717 3' -57 NC_004065.1 + 148364 0.67 0.866643
Target:  5'- --gUGgGCCaGUUCACCAAGcUGCGGa -3'
miRNA:   3'- acgACgUGGaCGAGUGGUUC-ACGCCg -5'
15717 3' -57 NC_004065.1 + 126728 0.67 0.887697
Target:  5'- cGCUGaGCCUGC-CGCC----GCGGCc -3'
miRNA:   3'- aCGACgUGGACGaGUGGuucaCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.