miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15717 3' -57 NC_004065.1 + 174077 1.11 0.002137
Target:  5'- gUGCUGCACCUGCUCACCAAGUGCGGCu -3'
miRNA:   3'- -ACGACGUGGACGAGUGGUUCACGCCG- -5'
15717 3' -57 NC_004065.1 + 127643 0.78 0.296378
Target:  5'- cGCUGC-CgCUGCggCGCCGAGgGCGGCg -3'
miRNA:   3'- aCGACGuG-GACGa-GUGGUUCaCGCCG- -5'
15717 3' -57 NC_004065.1 + 229937 0.77 0.361951
Target:  5'- gGCUGCACUuuuuUGC-CGCCGAGggcgccGCGGCa -3'
miRNA:   3'- aCGACGUGG----ACGaGUGGUUCa-----CGCCG- -5'
15717 3' -57 NC_004065.1 + 166849 0.75 0.428181
Target:  5'- cGUUGUAgCaGCUCGCCAGGgccucGCGGCa -3'
miRNA:   3'- aCGACGUgGaCGAGUGGUUCa----CGCCG- -5'
15717 3' -57 NC_004065.1 + 108937 0.74 0.482288
Target:  5'- cGCUGCGCCUGCggcaguaCGCCGAcgaccUGgGGCa -3'
miRNA:   3'- aCGACGUGGACGa------GUGGUUc----ACgCCG- -5'
15717 3' -57 NC_004065.1 + 62038 0.74 0.510555
Target:  5'- cGCUGCugCUGCUgguggUGCCGAa-GCGGCa -3'
miRNA:   3'- aCGACGugGACGA-----GUGGUUcaCGCCG- -5'
15717 3' -57 NC_004065.1 + 104515 0.74 0.523982
Target:  5'- aGCUGCACCccuucuucgacuucUGCUUccacacggagaacgGgCAGGUGCGGCc -3'
miRNA:   3'- aCGACGUGG--------------ACGAG--------------UgGUUCACGCCG- -5'
15717 3' -57 NC_004065.1 + 205755 0.74 0.529778
Target:  5'- gGCcGCgaGCCgugaGCUCACCGAGUGCcGCa -3'
miRNA:   3'- aCGaCG--UGGa---CGAGUGGUUCACGcCG- -5'
15717 3' -57 NC_004065.1 + 104841 0.73 0.54828
Target:  5'- aGCgGgGCCUGCuggcguUCGCCAacagcuacgacauGGUGCGGCu -3'
miRNA:   3'- aCGaCgUGGACG------AGUGGU-------------UCACGCCG- -5'
15717 3' -57 NC_004065.1 + 167415 0.73 0.559084
Target:  5'- cGCgGCugCUGC-CGCCGgcGGggGCGGCg -3'
miRNA:   3'- aCGaCGugGACGaGUGGU--UCa-CGCCG- -5'
15717 3' -57 NC_004065.1 + 63485 0.73 0.578874
Target:  5'- cGCcagGCGCCgucGCgcaGCCAGGUGCGGa -3'
miRNA:   3'- aCGa--CGUGGa--CGag-UGGUUCACGCCg -5'
15717 3' -57 NC_004065.1 + 128425 0.73 0.578874
Target:  5'- gGCgGCGCC-GC-CACCGAGUcugagcGCGGCg -3'
miRNA:   3'- aCGaCGUGGaCGaGUGGUUCA------CGCCG- -5'
15717 3' -57 NC_004065.1 + 97039 0.73 0.578874
Target:  5'- gUGCUGCGCgUGCgagCucuCCuGGUGUGGUg -3'
miRNA:   3'- -ACGACGUGgACGa--Gu--GGuUCACGCCG- -5'
15717 3' -57 NC_004065.1 + 197872 0.72 0.588828
Target:  5'- gGCUGguUCUGUUCGcuCCGAGUG-GGCg -3'
miRNA:   3'- aCGACguGGACGAGU--GGUUCACgCCG- -5'
15717 3' -57 NC_004065.1 + 204568 0.72 0.607816
Target:  5'- gUGCUGCGCguCUGCUCuCUggGUGUagucgcuGGCg -3'
miRNA:   3'- -ACGACGUG--GACGAGuGGuuCACG-------CCG- -5'
15717 3' -57 NC_004065.1 + 197186 0.72 0.628874
Target:  5'- cGCUGgACCgGCUCACCuucucGGacgaGCGGCc -3'
miRNA:   3'- aCGACgUGGaCGAGUGGu----UCa---CGCCG- -5'
15717 3' -57 NC_004065.1 + 147351 0.72 0.628874
Target:  5'- aUGCUGCGCCU-CUCGgCCAGGa--GGCa -3'
miRNA:   3'- -ACGACGUGGAcGAGU-GGUUCacgCCG- -5'
15717 3' -57 NC_004065.1 + 110001 0.72 0.628874
Target:  5'- cGCUGCGCCUcUUCGgCAAGcgccucaGCGGCg -3'
miRNA:   3'- aCGACGUGGAcGAGUgGUUCa------CGCCG- -5'
15717 3' -57 NC_004065.1 + 120068 0.72 0.628874
Target:  5'- cGCUGUGCCUGCaaCGCCAGGaUGUuggagaacggaGGCg -3'
miRNA:   3'- aCGACGUGGACGa-GUGGUUC-ACG-----------CCG- -5'
15717 3' -57 NC_004065.1 + 126497 0.72 0.63891
Target:  5'- cGCUGCACCcGCgUCGCCA--UGCGccGCg -3'
miRNA:   3'- aCGACGUGGaCG-AGUGGUucACGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.