miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15717 3' -57 NC_004065.1 + 126497 0.72 0.63891
Target:  5'- cGCUGCACCcGCgUCGCCA--UGCGccGCg -3'
miRNA:   3'- aCGACGUGGaCG-AGUGGUucACGC--CG- -5'
15717 3' -57 NC_004065.1 + 88156 0.71 0.64894
Target:  5'- aGggGCGCCcGCUCGCCGGacgaGCGGCg -3'
miRNA:   3'- aCgaCGUGGaCGAGUGGUUca--CGCCG- -5'
15717 3' -57 NC_004065.1 + 22405 0.71 0.648941
Target:  5'- aGCUGUcCCUGgUCACCGuc-GUGGCg -3'
miRNA:   3'- aCGACGuGGACgAGUGGUucaCGCCG- -5'
15717 3' -57 NC_004065.1 + 99959 0.71 0.648941
Target:  5'- gGCUGCugCUGCgaaacgccgucCGCCAAGUGa-GCg -3'
miRNA:   3'- aCGACGugGACGa----------GUGGUUCACgcCG- -5'
15717 3' -57 NC_004065.1 + 229003 0.71 0.657958
Target:  5'- cGCUGCGCCUgccugcggggcacGCUCGucucCCGAcaGCGGCu -3'
miRNA:   3'- aCGACGUGGA-------------CGAGU----GGUUcaCGCCG- -5'
15717 3' -57 NC_004065.1 + 91894 0.71 0.678924
Target:  5'- cGCUGUAgCCaUGCUCACCGAcgcgaucgccGUcGCGGUc -3'
miRNA:   3'- aCGACGU-GG-ACGAGUGGUU----------CA-CGCCG- -5'
15717 3' -57 NC_004065.1 + 97549 0.71 0.678924
Target:  5'- aGCgccaGCGCCUGCUgCAgCGGGUGCuugaaagacaggGGCg -3'
miRNA:   3'- aCGa---CGUGGACGA-GUgGUUCACG------------CCG- -5'
15717 3' -57 NC_004065.1 + 86901 0.71 0.698741
Target:  5'- cGCgGCGCCgGuCUCGCCcucgGCGGCg -3'
miRNA:   3'- aCGaCGUGGaC-GAGUGGuucaCGCCG- -5'
15717 3' -57 NC_004065.1 + 91572 0.7 0.71542
Target:  5'- uUGUUGUugCUGCUCGCCcgccccgaccccucGAGgacgcacgGCGGUu -3'
miRNA:   3'- -ACGACGugGACGAGUGG--------------UUCa-------CGCCG- -5'
15717 3' -57 NC_004065.1 + 121282 0.7 0.717369
Target:  5'- uUGCUcguccGCAUCgccaggaUGCUCACCGGGcaGCGGCc -3'
miRNA:   3'- -ACGA-----CGUGG-------ACGAGUGGUUCa-CGCCG- -5'
15717 3' -57 NC_004065.1 + 192827 0.7 0.718344
Target:  5'- cGCUGCGCUUGaggcaGCCGcucucGGUGaCGGCg -3'
miRNA:   3'- aCGACGUGGACgag--UGGU-----UCAC-GCCG- -5'
15717 3' -57 NC_004065.1 + 125337 0.7 0.728043
Target:  5'- cGCaGCACCUGCagcgUCGCCucGUGacccucCGGCg -3'
miRNA:   3'- aCGaCGUGGACG----AGUGGuuCAC------GCCG- -5'
15717 3' -57 NC_004065.1 + 82119 0.7 0.728043
Target:  5'- aGCUGCGCCcgGCUgACguAuccgGCGGCg -3'
miRNA:   3'- aCGACGUGGa-CGAgUGguUca--CGCCG- -5'
15717 3' -57 NC_004065.1 + 30804 0.7 0.728043
Target:  5'- --aUGCACCUGUcgUCACCGucgcGGUGCGcGUc -3'
miRNA:   3'- acgACGUGGACG--AGUGGU----UCACGC-CG- -5'
15717 3' -57 NC_004065.1 + 169654 0.7 0.736704
Target:  5'- gUGCUGguaACCUGCUCAUCGAcaugaccGUGC-GCa -3'
miRNA:   3'- -ACGACg--UGGACGAGUGGUU-------CACGcCG- -5'
15717 3' -57 NC_004065.1 + 194637 0.7 0.737662
Target:  5'- aGCUGUugC-GCUgCGCCAGG-GCGuGCa -3'
miRNA:   3'- aCGACGugGaCGA-GUGGUUCaCGC-CG- -5'
15717 3' -57 NC_004065.1 + 64487 0.7 0.741486
Target:  5'- aGCUGCACCacacgcucuucgaauUcuuucgucucucGCUCACCAcgcagcAGcUGCGGCg -3'
miRNA:   3'- aCGACGUGG---------------A------------CGAGUGGU------UC-ACGCCG- -5'
15717 3' -57 NC_004065.1 + 135105 0.7 0.756627
Target:  5'- cUGCUGCAUCaucaucCUCACCAucaccgggcgGGcGCGGCg -3'
miRNA:   3'- -ACGACGUGGac----GAGUGGU----------UCaCGCCG- -5'
15717 3' -57 NC_004065.1 + 198533 0.7 0.756627
Target:  5'- gGCgaUGUACCUcaGCcgCACCAGGUccgcgcGCGGCa -3'
miRNA:   3'- aCG--ACGUGGA--CGa-GUGGUUCA------CGCCG- -5'
15717 3' -57 NC_004065.1 + 118493 0.7 0.756627
Target:  5'- cGCUGUugCUGCgguggggccugUCGCuCGGGUuCGGCa -3'
miRNA:   3'- aCGACGugGACG-----------AGUG-GUUCAcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.