miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15717 3' -57 NC_004065.1 + 129 0.7 0.756627
Target:  5'- gGCUGCGC--GCacgUCACCGAGggcGUGGCa -3'
miRNA:   3'- aCGACGUGgaCG---AGUGGUUCa--CGCCG- -5'
15717 3' -57 NC_004065.1 + 550 0.66 0.923878
Target:  5'- gUGCgaGCGCCcccUGUUCGCgCAacgGGgcugGCGGCa -3'
miRNA:   3'- -ACGa-CGUGG---ACGAGUG-GU---UCa---CGCCG- -5'
15717 3' -57 NC_004065.1 + 5772 0.66 0.90003
Target:  5'- aGCUGUugCUuccccucccGCUCGCCGGGcGCaggaggaaaaaaaGGCg -3'
miRNA:   3'- aCGACGugGA---------CGAGUGGUUCaCG-------------CCG- -5'
15717 3' -57 NC_004065.1 + 18945 0.67 0.894287
Target:  5'- gGUcaUGCAUCuguUGCUCugCAccugGGUGUGGUg -3'
miRNA:   3'- aCG--ACGUGG---ACGAGugGU----UCACGCCG- -5'
15717 3' -57 NC_004065.1 + 19163 0.67 0.87387
Target:  5'- aUGCUGCcgauGCC-GCUUucuGCCGAG-GCGGg -3'
miRNA:   3'- -ACGACG----UGGaCGAG---UGGUUCaCGCCg -5'
15717 3' -57 NC_004065.1 + 20940 0.67 0.896861
Target:  5'- gGCggGCGCaCUGgucCUCACCAcugugaagacgcaggAGUaGCGGCg -3'
miRNA:   3'- aCGa-CGUG-GAC---GAGUGGU---------------UCA-CGCCG- -5'
15717 3' -57 NC_004065.1 + 21286 0.69 0.79322
Target:  5'- uUGCUcUAUCUGCUCGCCGuucccGCGGUu -3'
miRNA:   3'- -ACGAcGUGGACGAGUGGUuca--CGCCG- -5'
15717 3' -57 NC_004065.1 + 22405 0.71 0.648941
Target:  5'- aGCUGUcCCUGgUCACCGuc-GUGGCg -3'
miRNA:   3'- aCGACGuGGACgAGUGGUucaCGCCG- -5'
15717 3' -57 NC_004065.1 + 29899 0.69 0.77517
Target:  5'- aGCUGC-UCUG-UCACCAGGaGCGGa -3'
miRNA:   3'- aCGACGuGGACgAGUGGUUCaCGCCg -5'
15717 3' -57 NC_004065.1 + 30444 0.68 0.851585
Target:  5'- aGCUGUACCUGCcgaagCGgCGucuGgaccGCGGCa -3'
miRNA:   3'- aCGACGUGGACGa----GUgGUu--Ca---CGCCG- -5'
15717 3' -57 NC_004065.1 + 30804 0.7 0.728043
Target:  5'- --aUGCACCUGUcgUCACCGucgcGGUGCGcGUc -3'
miRNA:   3'- acgACGUGGACG--AGUGGU----UCACGC-CG- -5'
15717 3' -57 NC_004065.1 + 35973 0.68 0.819228
Target:  5'- cGCUGCuCCUGcCUCACUuacuAGaugGUGGUg -3'
miRNA:   3'- aCGACGuGGAC-GAGUGGu---UCa--CGCCG- -5'
15717 3' -57 NC_004065.1 + 36170 0.67 0.887697
Target:  5'- cGCUGUgucaGCC-GCUCGCgGGGggGCGcGCa -3'
miRNA:   3'- aCGACG----UGGaCGAGUGgUUCa-CGC-CG- -5'
15717 3' -57 NC_004065.1 + 43375 0.68 0.827581
Target:  5'- gUGgaGCGCCUuCcCGCCGAGaUGgGGCg -3'
miRNA:   3'- -ACgaCGUGGAcGaGUGGUUC-ACgCCG- -5'
15717 3' -57 NC_004065.1 + 43770 0.67 0.873871
Target:  5'- gGCgaagGUACCUGUUCggggGCCAGGccaGgGGCa -3'
miRNA:   3'- aCGa---CGUGGACGAG----UGGUUCa--CgCCG- -5'
15717 3' -57 NC_004065.1 + 44146 0.67 0.87387
Target:  5'- ---cGCgACCaGCUCACCAaacGGUGCaGCg -3'
miRNA:   3'- acgaCG-UGGaCGAGUGGU---UCACGcCG- -5'
15717 3' -57 NC_004065.1 + 47273 0.68 0.82758
Target:  5'- aGgaGgAUCUGUUCGCCGAcGUGuCGGUg -3'
miRNA:   3'- aCgaCgUGGACGAGUGGUU-CAC-GCCG- -5'
15717 3' -57 NC_004065.1 + 55902 0.69 0.80204
Target:  5'- aUGCcGCACCU-CUCACgGAGUccgcGcCGGCa -3'
miRNA:   3'- -ACGaCGUGGAcGAGUGgUUCA----C-GCCG- -5'
15717 3' -57 NC_004065.1 + 55945 0.66 0.912723
Target:  5'- aGCcGCACUUGgUgAgCAGGUGCaGCa -3'
miRNA:   3'- aCGaCGUGGACgAgUgGUUCACGcCG- -5'
15717 3' -57 NC_004065.1 + 59718 0.69 0.79322
Target:  5'- aUGCUGCcgaUGUUUACCGAcccgGCGGCg -3'
miRNA:   3'- -ACGACGuggACGAGUGGUUca--CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.