miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15717 3' -57 NC_004065.1 + 198533 0.7 0.756627
Target:  5'- gGCgaUGUACCUcaGCcgCACCAGGUccgcgcGCGGCa -3'
miRNA:   3'- aCG--ACGUGGA--CGa-GUGGUUCA------CGCCG- -5'
15717 3' -57 NC_004065.1 + 126497 0.72 0.63891
Target:  5'- cGCUGCACCcGCgUCGCCA--UGCGccGCg -3'
miRNA:   3'- aCGACGUGGaCG-AGUGGUucACGC--CG- -5'
15717 3' -57 NC_004065.1 + 88156 0.71 0.64894
Target:  5'- aGggGCGCCcGCUCGCCGGacgaGCGGCg -3'
miRNA:   3'- aCgaCGUGGaCGAGUGGUUca--CGCCG- -5'
15717 3' -57 NC_004065.1 + 97549 0.71 0.678924
Target:  5'- aGCgccaGCGCCUGCUgCAgCGGGUGCuugaaagacaggGGCg -3'
miRNA:   3'- aCGa---CGUGGACGA-GUgGUUCACG------------CCG- -5'
15717 3' -57 NC_004065.1 + 121282 0.7 0.717369
Target:  5'- uUGCUcguccGCAUCgccaggaUGCUCACCGGGcaGCGGCc -3'
miRNA:   3'- -ACGA-----CGUGG-------ACGAGUGGUUCa-CGCCG- -5'
15717 3' -57 NC_004065.1 + 82119 0.7 0.728043
Target:  5'- aGCUGCGCCcgGCUgACguAuccgGCGGCg -3'
miRNA:   3'- aCGACGUGGa-CGAgUGguUca--CGCCG- -5'
15717 3' -57 NC_004065.1 + 30804 0.7 0.728043
Target:  5'- --aUGCACCUGUcgUCACCGucgcGGUGCGcGUc -3'
miRNA:   3'- acgACGUGGACG--AGUGGU----UCACGC-CG- -5'
15717 3' -57 NC_004065.1 + 125337 0.7 0.728043
Target:  5'- cGCaGCACCUGCagcgUCGCCucGUGacccucCGGCg -3'
miRNA:   3'- aCGaCGUGGACG----AGUGGuuCAC------GCCG- -5'
15717 3' -57 NC_004065.1 + 64487 0.7 0.741486
Target:  5'- aGCUGCACCacacgcucuucgaauUcuuucgucucucGCUCACCAcgcagcAGcUGCGGCg -3'
miRNA:   3'- aCGACGUGG---------------A------------CGAGUGGU------UC-ACGCCG- -5'
15717 3' -57 NC_004065.1 + 120868 0.72 0.63891
Target:  5'- aUGC-GCACCgGCUUGCCcGGggucaggGCGGCg -3'
miRNA:   3'- -ACGaCGUGGaCGAGUGGuUCa------CGCCG- -5'
15717 3' -57 NC_004065.1 + 147351 0.72 0.628874
Target:  5'- aUGCUGCGCCU-CUCGgCCAGGa--GGCa -3'
miRNA:   3'- -ACGACGUGGAcGAGU-GGUUCacgCCG- -5'
15717 3' -57 NC_004065.1 + 110001 0.72 0.628874
Target:  5'- cGCUGCGCCUcUUCGgCAAGcgccucaGCGGCg -3'
miRNA:   3'- aCGACGUGGAcGAGUgGUUCa------CGCCG- -5'
15717 3' -57 NC_004065.1 + 229937 0.77 0.361951
Target:  5'- gGCUGCACUuuuuUGC-CGCCGAGggcgccGCGGCa -3'
miRNA:   3'- aCGACGUGG----ACGaGUGGUUCa-----CGCCG- -5'
15717 3' -57 NC_004065.1 + 166849 0.75 0.428181
Target:  5'- cGUUGUAgCaGCUCGCCAGGgccucGCGGCa -3'
miRNA:   3'- aCGACGUgGaCGAGUGGUUCa----CGCCG- -5'
15717 3' -57 NC_004065.1 + 108937 0.74 0.482288
Target:  5'- cGCUGCGCCUGCggcaguaCGCCGAcgaccUGgGGCa -3'
miRNA:   3'- aCGACGUGGACGa------GUGGUUc----ACgCCG- -5'
15717 3' -57 NC_004065.1 + 62038 0.74 0.510555
Target:  5'- cGCUGCugCUGCUgguggUGCCGAa-GCGGCa -3'
miRNA:   3'- aCGACGugGACGA-----GUGGUUcaCGCCG- -5'
15717 3' -57 NC_004065.1 + 97039 0.73 0.578874
Target:  5'- gUGCUGCGCgUGCgagCucuCCuGGUGUGGUg -3'
miRNA:   3'- -ACGACGUGgACGa--Gu--GGuUCACGCCG- -5'
15717 3' -57 NC_004065.1 + 128425 0.73 0.578874
Target:  5'- gGCgGCGCC-GC-CACCGAGUcugagcGCGGCg -3'
miRNA:   3'- aCGaCGUGGaCGaGUGGUUCA------CGCCG- -5'
15717 3' -57 NC_004065.1 + 63485 0.73 0.578874
Target:  5'- cGCcagGCGCCgucGCgcaGCCAGGUGCGGa -3'
miRNA:   3'- aCGa--CGUGGa--CGag-UGGUUCACGCCg -5'
15717 3' -57 NC_004065.1 + 120068 0.72 0.628874
Target:  5'- cGCUGUGCCUGCaaCGCCAGGaUGUuggagaacggaGGCg -3'
miRNA:   3'- aCGACGUGGACGa-GUGGUUC-ACG-----------CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.