miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15717 5' -60.3 NC_004065.1 + 185219 0.66 0.86613
Target:  5'- uGGCGCGGAgaaUCCGUaucGGAGGacacGuCGGa -3'
miRNA:   3'- gCCGCGCCUg--AGGCAc--UCUCCa---C-GCC- -5'
15717 5' -60.3 NC_004065.1 + 184874 0.66 0.859065
Target:  5'- gCGGCG-GGACgCCGggaacgaGAGAGGaucgggaGCGGg -3'
miRNA:   3'- -GCCGCgCCUGaGGCa------CUCUCCa------CGCC- -5'
15717 5' -60.3 NC_004065.1 + 127488 0.66 0.854739
Target:  5'- gGGCGCGGcgggagcguuguccaGCUCCcUGAguaaGAGGU-CGGa -3'
miRNA:   3'- gCCGCGCC---------------UGAGGcACU----CUCCAcGCC- -5'
15717 5' -60.3 NC_004065.1 + 159504 0.66 0.851821
Target:  5'- aGGCGCGccugcaGCUCCGUcGAGaAGG-GCGc -3'
miRNA:   3'- gCCGCGCc-----UGAGGCA-CUC-UCCaCGCc -5'
15717 5' -60.3 NC_004065.1 + 135025 0.66 0.851821
Target:  5'- -uGCGCgaaGGGCUCCGcuuuuucgGAGAGGUcaggcguacGCGGc -3'
miRNA:   3'- gcCGCG---CCUGAGGCa-------CUCUCCA---------CGCC- -5'
15717 5' -60.3 NC_004065.1 + 77853 0.66 0.844405
Target:  5'- gCGGCGUGGGCUCCcc----GGUGCa- -3'
miRNA:   3'- -GCCGCGCCUGAGGcacucuCCACGcc -5'
15717 5' -60.3 NC_004065.1 + 81909 0.66 0.844405
Target:  5'- uCGGCGUGGACgUCGUaGGcguGGUGCa- -3'
miRNA:   3'- -GCCGCGCCUGaGGCAcUCu--CCACGcc -5'
15717 5' -60.3 NC_004065.1 + 142430 0.66 0.843654
Target:  5'- cCGGCGCGccGGCUCCucaggGUcaugaaggcgaucGAGAGGgauucGCGGg -3'
miRNA:   3'- -GCCGCGC--CUGAGG-----CA-------------CUCUCCa----CGCC- -5'
15717 5' -60.3 NC_004065.1 + 96662 0.66 0.829076
Target:  5'- uCGGCgucgGCGGGCUcgcCCGacGGAGGaucgUGCGGg -3'
miRNA:   3'- -GCCG----CGCCUGA---GGCacUCUCC----ACGCC- -5'
15717 5' -60.3 NC_004065.1 + 211789 0.66 0.829076
Target:  5'- gGGagacGACUCCG-GAGAGGcGCGGg -3'
miRNA:   3'- gCCgcgcCUGAGGCaCUCUCCaCGCC- -5'
15717 5' -60.3 NC_004065.1 + 19737 0.66 0.829076
Target:  5'- gGGCGCGuaucccaggaaGACgggggCGUGcGGGGGUGUGGg -3'
miRNA:   3'- gCCGCGC-----------CUGag---GCAC-UCUCCACGCC- -5'
15717 5' -60.3 NC_004065.1 + 68303 0.66 0.829076
Target:  5'- uCGGCGaCGGACUUCGaGAcggugucgucGuGGcUGCGGg -3'
miRNA:   3'- -GCCGC-GCCUGAGGCaCU----------CuCC-ACGCC- -5'
15717 5' -60.3 NC_004065.1 + 27136 0.67 0.821175
Target:  5'- aGGUGgaaGGGCUaCGcGAGAGGcGCGGg -3'
miRNA:   3'- gCCGCg--CCUGAgGCaCUCUCCaCGCC- -5'
15717 5' -60.3 NC_004065.1 + 143299 0.67 0.813126
Target:  5'- gCGGCGuCGGGggCCGgggcagGAGGGGaagaggggGCGGg -3'
miRNA:   3'- -GCCGC-GCCUgaGGCa-----CUCUCCa-------CGCC- -5'
15717 5' -60.3 NC_004065.1 + 59935 0.67 0.788149
Target:  5'- gCGGCGCGGccagaaGC-CCG-GAGuGGUGCc- -3'
miRNA:   3'- -GCCGCGCC------UGaGGCaCUCuCCACGcc -5'
15717 5' -60.3 NC_004065.1 + 86995 0.67 0.788149
Target:  5'- aGGCGCagGGACUCCGaaacGAcgccGGUGCGa -3'
miRNA:   3'- gCCGCG--CCUGAGGCa---CUcu--CCACGCc -5'
15717 5' -60.3 NC_004065.1 + 117287 0.67 0.779571
Target:  5'- cCGGCGaucaGGACgaUCUGUcAGaAGGUGUGGu -3'
miRNA:   3'- -GCCGCg---CCUG--AGGCAcUC-UCCACGCC- -5'
15717 5' -60.3 NC_004065.1 + 81130 0.67 0.779571
Target:  5'- uGGCGcCGGAgaUCGUGAGcaucacGGUGuCGGa -3'
miRNA:   3'- gCCGC-GCCUgaGGCACUCu-----CCAC-GCC- -5'
15717 5' -60.3 NC_004065.1 + 66603 0.67 0.779571
Target:  5'- uGGaCGCGGACaggaUCCG-GAGccgcGGGcUGCGGc -3'
miRNA:   3'- gCC-GCGCCUG----AGGCaCUC----UCC-ACGCC- -5'
15717 5' -60.3 NC_004065.1 + 24260 0.68 0.770878
Target:  5'- uGGUGCGGcACUCgGUGAGcucacGGcucGCGGc -3'
miRNA:   3'- gCCGCGCC-UGAGgCACUCu----CCa--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.