miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15717 5' -60.3 NC_004065.1 + 174118 1.09 0.002262
Target:  5'- cCGGCGCGGACUCCGUGAGAGGUGCGGc -3'
miRNA:   3'- -GCCGCGCCUGAGGCACUCUCCACGCC- -5'
15717 5' -60.3 NC_004065.1 + 94442 0.73 0.483116
Target:  5'- gCGGCGCGuGugUUCGaaGGAGGUGaCGGc -3'
miRNA:   3'- -GCCGCGC-CugAGGCacUCUCCAC-GCC- -5'
15717 5' -60.3 NC_004065.1 + 141607 0.73 0.483116
Target:  5'- aCGGCgGCGGGCUCCGcUGccGGcGGUGgCGGc -3'
miRNA:   3'- -GCCG-CGCCUGAGGC-AC--UCuCCAC-GCC- -5'
15717 5' -60.3 NC_004065.1 + 215319 0.7 0.612686
Target:  5'- aCGGCGUGGA-UCUGaUGGGuggcGGUGUGGa -3'
miRNA:   3'- -GCCGCGCCUgAGGC-ACUCu---CCACGCC- -5'
15717 5' -60.3 NC_004065.1 + 136748 0.7 0.631741
Target:  5'- gGGCGCGG-UUUCGcGGGGGaUGCGGg -3'
miRNA:   3'- gCCGCGCCuGAGGCaCUCUCcACGCC- -5'
15717 5' -60.3 NC_004065.1 + 159498 0.7 0.650798
Target:  5'- uGGCGCGGAUUCauuUGGGGGGUcaGGg -3'
miRNA:   3'- gCCGCGCCUGAGgc-ACUCUCCAcgCC- -5'
15717 5' -60.3 NC_004065.1 + 136592 0.69 0.669803
Target:  5'- gCGGUcCGGGgaUCCGgGuGGGGUGCGGg -3'
miRNA:   3'- -GCCGcGCCUg-AGGCaCuCUCCACGCC- -5'
15717 5' -60.3 NC_004065.1 + 98125 0.69 0.679269
Target:  5'- aGuCGCGGAUgUCCG-GAGAGGUcugGCGGu -3'
miRNA:   3'- gCcGCGCCUG-AGGCaCUCUCCA---CGCC- -5'
15717 5' -60.3 NC_004065.1 + 35390 0.69 0.688701
Target:  5'- aGGCGUGGACcgucaucggcgCCGUGGGAGaGUacCGGg -3'
miRNA:   3'- gCCGCGCCUGa----------GGCACUCUC-CAc-GCC- -5'
15717 5' -60.3 NC_004065.1 + 162076 0.68 0.753177
Target:  5'- cCGGCaGC-GACUgCGUG-GcGGUGCGGa -3'
miRNA:   3'- -GCCG-CGcCUGAgGCACuCuCCACGCC- -5'
15717 5' -60.3 NC_004065.1 + 226198 0.68 0.762077
Target:  5'- gGGCGCGGGCUCCacgGAGAccu-CGGa -3'
miRNA:   3'- gCCGCGCCUGAGGca-CUCUccacGCC- -5'
15717 5' -60.3 NC_004065.1 + 24260 0.68 0.770878
Target:  5'- uGGUGCGGcACUCgGUGAGcucacGGcucGCGGc -3'
miRNA:   3'- gCCGCGCC-UGAGgCACUCu----CCa--CGCC- -5'
15717 5' -60.3 NC_004065.1 + 117287 0.67 0.779571
Target:  5'- cCGGCGaucaGGACgaUCUGUcAGaAGGUGUGGu -3'
miRNA:   3'- -GCCGCg---CCUG--AGGCAcUC-UCCACGCC- -5'
15717 5' -60.3 NC_004065.1 + 81130 0.67 0.779571
Target:  5'- uGGCGcCGGAgaUCGUGAGcaucacGGUGuCGGa -3'
miRNA:   3'- gCCGC-GCCUgaGGCACUCu-----CCAC-GCC- -5'
15717 5' -60.3 NC_004065.1 + 66603 0.67 0.779571
Target:  5'- uGGaCGCGGACaggaUCCG-GAGccgcGGGcUGCGGc -3'
miRNA:   3'- gCC-GCGCCUG----AGGCaCUC----UCC-ACGCC- -5'
15717 5' -60.3 NC_004065.1 + 86995 0.67 0.788149
Target:  5'- aGGCGCagGGACUCCGaaacGAcgccGGUGCGa -3'
miRNA:   3'- gCCGCG--CCUGAGGCa---CUcu--CCACGCc -5'
15717 5' -60.3 NC_004065.1 + 59935 0.67 0.788149
Target:  5'- gCGGCGCGGccagaaGC-CCG-GAGuGGUGCc- -3'
miRNA:   3'- -GCCGCGCC------UGaGGCaCUCuCCACGcc -5'
15717 5' -60.3 NC_004065.1 + 143299 0.67 0.813126
Target:  5'- gCGGCGuCGGGggCCGgggcagGAGGGGaagaggggGCGGg -3'
miRNA:   3'- -GCCGC-GCCUgaGGCa-----CUCUCCa-------CGCC- -5'
15717 5' -60.3 NC_004065.1 + 27136 0.67 0.821175
Target:  5'- aGGUGgaaGGGCUaCGcGAGAGGcGCGGg -3'
miRNA:   3'- gCCGCg--CCUGAgGCaCUCUCCaCGCC- -5'
15717 5' -60.3 NC_004065.1 + 96662 0.66 0.829076
Target:  5'- uCGGCgucgGCGGGCUcgcCCGacGGAGGaucgUGCGGg -3'
miRNA:   3'- -GCCG----CGCCUGA---GGCacUCUCC----ACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.