Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15717 | 5' | -60.3 | NC_004065.1 | + | 226198 | 0.68 | 0.762077 |
Target: 5'- gGGCGCGGGCUCCacgGAGAccu-CGGa -3' miRNA: 3'- gCCGCGCCUGAGGca-CUCUccacGCC- -5' |
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15717 | 5' | -60.3 | NC_004065.1 | + | 162076 | 0.68 | 0.753177 |
Target: 5'- cCGGCaGC-GACUgCGUG-GcGGUGCGGa -3' miRNA: 3'- -GCCG-CGcCUGAgGCACuCuCCACGCC- -5' |
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15717 | 5' | -60.3 | NC_004065.1 | + | 35390 | 0.69 | 0.688701 |
Target: 5'- aGGCGUGGACcgucaucggcgCCGUGGGAGaGUacCGGg -3' miRNA: 3'- gCCGCGCCUGa----------GGCACUCUC-CAc-GCC- -5' |
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15717 | 5' | -60.3 | NC_004065.1 | + | 98125 | 0.69 | 0.679269 |
Target: 5'- aGuCGCGGAUgUCCG-GAGAGGUcugGCGGu -3' miRNA: 3'- gCcGCGCCUG-AGGCaCUCUCCA---CGCC- -5' |
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15717 | 5' | -60.3 | NC_004065.1 | + | 136592 | 0.69 | 0.669803 |
Target: 5'- gCGGUcCGGGgaUCCGgGuGGGGUGCGGg -3' miRNA: 3'- -GCCGcGCCUg-AGGCaCuCUCCACGCC- -5' |
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15717 | 5' | -60.3 | NC_004065.1 | + | 159498 | 0.7 | 0.650798 |
Target: 5'- uGGCGCGGAUUCauuUGGGGGGUcaGGg -3' miRNA: 3'- gCCGCGCCUGAGgc-ACUCUCCAcgCC- -5' |
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15717 | 5' | -60.3 | NC_004065.1 | + | 136748 | 0.7 | 0.631741 |
Target: 5'- gGGCGCGG-UUUCGcGGGGGaUGCGGg -3' miRNA: 3'- gCCGCGCCuGAGGCaCUCUCcACGCC- -5' |
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15717 | 5' | -60.3 | NC_004065.1 | + | 215319 | 0.7 | 0.612686 |
Target: 5'- aCGGCGUGGA-UCUGaUGGGuggcGGUGUGGa -3' miRNA: 3'- -GCCGCGCCUgAGGC-ACUCu---CCACGCC- -5' |
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15717 | 5' | -60.3 | NC_004065.1 | + | 94442 | 0.73 | 0.483116 |
Target: 5'- gCGGCGCGuGugUUCGaaGGAGGUGaCGGc -3' miRNA: 3'- -GCCGCGC-CugAGGCacUCUCCAC-GCC- -5' |
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15717 | 5' | -60.3 | NC_004065.1 | + | 141607 | 0.73 | 0.483116 |
Target: 5'- aCGGCgGCGGGCUCCGcUGccGGcGGUGgCGGc -3' miRNA: 3'- -GCCG-CGCCUGAGGC-AC--UCuCCAC-GCC- -5' |
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15717 | 5' | -60.3 | NC_004065.1 | + | 174118 | 1.09 | 0.002262 |
Target: 5'- cCGGCGCGGACUCCGUGAGAGGUGCGGc -3' miRNA: 3'- -GCCGCGCCUGAGGCACUCUCCACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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