miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15717 5' -60.3 NC_004065.1 + 159498 0.7 0.650798
Target:  5'- uGGCGCGGAUUCauuUGGGGGGUcaGGg -3'
miRNA:   3'- gCCGCGCCUGAGgc-ACUCUCCAcgCC- -5'
15717 5' -60.3 NC_004065.1 + 184874 0.66 0.859065
Target:  5'- gCGGCG-GGACgCCGggaacgaGAGAGGaucgggaGCGGg -3'
miRNA:   3'- -GCCGCgCCUGaGGCa------CUCUCCa------CGCC- -5'
15717 5' -60.3 NC_004065.1 + 135025 0.66 0.851821
Target:  5'- -uGCGCgaaGGGCUCCGcuuuuucgGAGAGGUcaggcguacGCGGc -3'
miRNA:   3'- gcCGCG---CCUGAGGCa-------CUCUCCA---------CGCC- -5'
15717 5' -60.3 NC_004065.1 + 81909 0.66 0.844405
Target:  5'- uCGGCGUGGACgUCGUaGGcguGGUGCa- -3'
miRNA:   3'- -GCCGCGCCUGaGGCAcUCu--CCACGcc -5'
15717 5' -60.3 NC_004065.1 + 142430 0.66 0.843654
Target:  5'- cCGGCGCGccGGCUCCucaggGUcaugaaggcgaucGAGAGGgauucGCGGg -3'
miRNA:   3'- -GCCGCGC--CUGAGG-----CA-------------CUCUCCa----CGCC- -5'
15717 5' -60.3 NC_004065.1 + 68303 0.66 0.829076
Target:  5'- uCGGCGaCGGACUUCGaGAcggugucgucGuGGcUGCGGg -3'
miRNA:   3'- -GCCGC-GCCUGAGGCaCU----------CuCC-ACGCC- -5'
15717 5' -60.3 NC_004065.1 + 96662 0.66 0.829076
Target:  5'- uCGGCgucgGCGGGCUcgcCCGacGGAGGaucgUGCGGg -3'
miRNA:   3'- -GCCG----CGCCUGA---GGCacUCUCC----ACGCC- -5'
15717 5' -60.3 NC_004065.1 + 19737 0.66 0.829076
Target:  5'- gGGCGCGuaucccaggaaGACgggggCGUGcGGGGGUGUGGg -3'
miRNA:   3'- gCCGCGC-----------CUGag---GCAC-UCUCCACGCC- -5'
15717 5' -60.3 NC_004065.1 + 59935 0.67 0.788149
Target:  5'- gCGGCGCGGccagaaGC-CCG-GAGuGGUGCc- -3'
miRNA:   3'- -GCCGCGCC------UGaGGCaCUCuCCACGcc -5'
15717 5' -60.3 NC_004065.1 + 66603 0.67 0.779571
Target:  5'- uGGaCGCGGACaggaUCCG-GAGccgcGGGcUGCGGc -3'
miRNA:   3'- gCC-GCGCCUG----AGGCaCUC----UCC-ACGCC- -5'
15717 5' -60.3 NC_004065.1 + 24260 0.68 0.770878
Target:  5'- uGGUGCGGcACUCgGUGAGcucacGGcucGCGGc -3'
miRNA:   3'- gCCGCGCC-UGAGgCACUCu----CCa--CGCC- -5'
15717 5' -60.3 NC_004065.1 + 226198 0.68 0.762077
Target:  5'- gGGCGCGGGCUCCacgGAGAccu-CGGa -3'
miRNA:   3'- gCCGCGCCUGAGGca-CUCUccacGCC- -5'
15717 5' -60.3 NC_004065.1 + 98125 0.69 0.679269
Target:  5'- aGuCGCGGAUgUCCG-GAGAGGUcugGCGGu -3'
miRNA:   3'- gCcGCGCCUG-AGGCaCUCUCCA---CGCC- -5'
15717 5' -60.3 NC_004065.1 + 35390 0.69 0.688701
Target:  5'- aGGCGUGGACcgucaucggcgCCGUGGGAGaGUacCGGg -3'
miRNA:   3'- gCCGCGCCUGa----------GGCACUCUC-CAc-GCC- -5'
15717 5' -60.3 NC_004065.1 + 136592 0.69 0.669803
Target:  5'- gCGGUcCGGGgaUCCGgGuGGGGUGCGGg -3'
miRNA:   3'- -GCCGcGCCUg-AGGCaCuCUCCACGCC- -5'
15717 5' -60.3 NC_004065.1 + 136748 0.7 0.631741
Target:  5'- gGGCGCGG-UUUCGcGGGGGaUGCGGg -3'
miRNA:   3'- gCCGCGCCuGAGGCaCUCUCcACGCC- -5'
15717 5' -60.3 NC_004065.1 + 215319 0.7 0.612686
Target:  5'- aCGGCGUGGA-UCUGaUGGGuggcGGUGUGGa -3'
miRNA:   3'- -GCCGCGCCUgAGGC-ACUCu---CCACGCC- -5'
15717 5' -60.3 NC_004065.1 + 141607 0.73 0.483116
Target:  5'- aCGGCgGCGGGCUCCGcUGccGGcGGUGgCGGc -3'
miRNA:   3'- -GCCG-CGCCUGAGGC-AC--UCuCCAC-GCC- -5'
15717 5' -60.3 NC_004065.1 + 94442 0.73 0.483116
Target:  5'- gCGGCGCGuGugUUCGaaGGAGGUGaCGGc -3'
miRNA:   3'- -GCCGCGC-CugAGGCacUCUCCAC-GCC- -5'
15717 5' -60.3 NC_004065.1 + 185219 0.66 0.86613
Target:  5'- uGGCGCGGAgaaUCCGUaucGGAGGacacGuCGGa -3'
miRNA:   3'- gCCGCGCCUg--AGGCAc--UCUCCa---C-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.