miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15718 3' -58.7 NC_004065.1 + 119267 0.66 0.892187
Target:  5'- cGCCUUAUaugucaggcggCGCCAgaaGGGGacGUCCGCc -3'
miRNA:   3'- -UGGAGUA-----------GCGGUag-CCCCacCAGGUG- -5'
15718 3' -58.7 NC_004065.1 + 60084 0.66 0.892187
Target:  5'- cGCgCUCGUCGUCgucgaagagGUCGGGGUagaagcggccGG-CCGCg -3'
miRNA:   3'- -UG-GAGUAGCGG---------UAGCCCCA----------CCaGGUG- -5'
15718 3' -58.7 NC_004065.1 + 151164 0.66 0.885683
Target:  5'- cACCUgGUCGuucCCGUaGGGGgagaGGUCCAg -3'
miRNA:   3'- -UGGAgUAGC---GGUAgCCCCa---CCAGGUg -5'
15718 3' -58.7 NC_004065.1 + 78923 0.66 0.878972
Target:  5'- uGCCgUCGUCGCCGagcUCGGGcGccaccaGGcCCGCg -3'
miRNA:   3'- -UGG-AGUAGCGGU---AGCCC-Ca-----CCaGGUG- -5'
15718 3' -58.7 NC_004065.1 + 28950 0.66 0.87206
Target:  5'- cGCCUcCGUCGCCGgaggCGGGGcg--CUACg -3'
miRNA:   3'- -UGGA-GUAGCGGUa---GCCCCaccaGGUG- -5'
15718 3' -58.7 NC_004065.1 + 197813 0.66 0.864951
Target:  5'- cGCCcgCggCGCCAcgUUGGGGUcGUCCAg -3'
miRNA:   3'- -UGGa-GuaGCGGU--AGCCCCAcCAGGUg -5'
15718 3' -58.7 NC_004065.1 + 102547 0.66 0.864951
Target:  5'- uCCUCGUCGgUGgcgcCGGGGUcgGGUCCcGCg -3'
miRNA:   3'- uGGAGUAGCgGUa---GCCCCA--CCAGG-UG- -5'
15718 3' -58.7 NC_004065.1 + 180959 0.66 0.860592
Target:  5'- uACCUCcUUGCCGgucagcuggccggaCGGGGUuucGGUCCGg -3'
miRNA:   3'- -UGGAGuAGCGGUa-------------GCCCCA---CCAGGUg -5'
15718 3' -58.7 NC_004065.1 + 146552 0.66 0.857649
Target:  5'- uGCCcgacaUCGUCGgCGUCGcGGGUaaGGUgCCGCu -3'
miRNA:   3'- -UGG-----AGUAGCgGUAGC-CCCA--CCA-GGUG- -5'
15718 3' -58.7 NC_004065.1 + 130061 0.67 0.85016
Target:  5'- gGCCcgagCA-CGCCG-CGGcGGUGGUCgACu -3'
miRNA:   3'- -UGGa---GUaGCGGUaGCC-CCACCAGgUG- -5'
15718 3' -58.7 NC_004065.1 + 207700 0.67 0.823377
Target:  5'- gGCCUCGUCGUgCGaCGGGGUcgucaacgucaccGUCCACc -3'
miRNA:   3'- -UGGAGUAGCG-GUaGCCCCAc------------CAGGUG- -5'
15718 3' -58.7 NC_004065.1 + 130907 0.67 0.818452
Target:  5'- cACCUgCGUUGCCGUCaaacGGGGUuuauacGG-CCGCg -3'
miRNA:   3'- -UGGA-GUAGCGGUAG----CCCCA------CCaGGUG- -5'
15718 3' -58.7 NC_004065.1 + 182463 0.67 0.810119
Target:  5'- aGCCUCugggccuggGUCGCUggGUgGGcGGUGGUCC-Ca -3'
miRNA:   3'- -UGGAG---------UAGCGG--UAgCC-CCACCAGGuG- -5'
15718 3' -58.7 NC_004065.1 + 195432 0.68 0.801639
Target:  5'- cGCCgCGUCGCCGUCGucGGacaGGUCCGa -3'
miRNA:   3'- -UGGaGUAGCGGUAGCc-CCa--CCAGGUg -5'
15718 3' -58.7 NC_004065.1 + 203699 0.68 0.793017
Target:  5'- gACgaCGUCGUCucCGGGG-GGUCCAUg -3'
miRNA:   3'- -UGgaGUAGCGGuaGCCCCaCCAGGUG- -5'
15718 3' -58.7 NC_004065.1 + 132505 0.68 0.793017
Target:  5'- cGCgUCGuUCGCgcgcauCGUCGGGGUGaUCCGCc -3'
miRNA:   3'- -UGgAGU-AGCG------GUAGCCCCACcAGGUG- -5'
15718 3' -58.7 NC_004065.1 + 154103 0.68 0.784262
Target:  5'- cGCCUCcUCGCagCAUgGGGaucGUGuGUCCACa -3'
miRNA:   3'- -UGGAGuAGCG--GUAgCCC---CAC-CAGGUG- -5'
15718 3' -58.7 NC_004065.1 + 203446 0.68 0.766384
Target:  5'- uGCCcaUCAUCGCCcgcagucucacAUCGGccgGGUCCGCa -3'
miRNA:   3'- -UGG--AGUAGCGG-----------UAGCCccaCCAGGUG- -5'
15718 3' -58.7 NC_004065.1 + 28377 0.68 0.757277
Target:  5'- -aCUCGUCGgCGUcuaccgggacacCGGGGUGuUCCACg -3'
miRNA:   3'- ugGAGUAGCgGUA------------GCCCCACcAGGUG- -5'
15718 3' -58.7 NC_004065.1 + 100025 0.69 0.719914
Target:  5'- -gCUCGUCGCUGccUCGGGGcGGuauccUCCGCa -3'
miRNA:   3'- ugGAGUAGCGGU--AGCCCCaCC-----AGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.