miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15718 5' -57.8 NC_004065.1 + 143633 0.66 0.939514
Target:  5'- -aGCGGuCUauaaCUGAGGCCGAG-ACCu -3'
miRNA:   3'- cgCGCUuGGga--GGCUCCGGCUCaUGG- -5'
15718 5' -57.8 NC_004065.1 + 183128 0.66 0.939514
Target:  5'- uCGCGGccCCCUCC-AGGCCGuGcauCCu -3'
miRNA:   3'- cGCGCUu-GGGAGGcUCCGGCuCau-GG- -5'
15718 5' -57.8 NC_004065.1 + 27818 0.66 0.939514
Target:  5'- uGUGuCGGguACCCcCCGGggugguggcuGGCCGuGGUGCCg -3'
miRNA:   3'- -CGC-GCU--UGGGaGGCU----------CCGGC-UCAUGG- -5'
15718 5' -57.8 NC_004065.1 + 177026 0.66 0.934935
Target:  5'- -aGCGAACuCCUCCG-GaUCGAGgacACCg -3'
miRNA:   3'- cgCGCUUG-GGAGGCuCcGGCUCa--UGG- -5'
15718 5' -57.8 NC_004065.1 + 42832 0.66 0.934935
Target:  5'- cGgGgGAACCCccUCCGGGG-CGAGU-CUu -3'
miRNA:   3'- -CgCgCUUGGG--AGGCUCCgGCUCAuGG- -5'
15718 5' -57.8 NC_004065.1 + 173880 0.66 0.934935
Target:  5'- aUGCGAcucGCUCgCCGAGGCugcagaaggCGAGcGCCg -3'
miRNA:   3'- cGCGCU---UGGGaGGCUCCG---------GCUCaUGG- -5'
15718 5' -57.8 NC_004065.1 + 181435 0.66 0.934935
Target:  5'- uCGCcAG-CCUCCugGAGGCCGAcuccGUGCCc -3'
miRNA:   3'- cGCGcUUgGGAGG--CUCCGGCU----CAUGG- -5'
15718 5' -57.8 NC_004065.1 + 139902 0.66 0.934935
Target:  5'- cCGCGGGgCCUCC--GGCCGgcGGcGCCa -3'
miRNA:   3'- cGCGCUUgGGAGGcuCCGGC--UCaUGG- -5'
15718 5' -57.8 NC_004065.1 + 194819 0.66 0.934466
Target:  5'- -aGCGAGCgguCCUCCGAgaugaccgucgucGGUCGgaucguuuucGGUGCCa -3'
miRNA:   3'- cgCGCUUG---GGAGGCU-------------CCGGC----------UCAUGG- -5'
15718 5' -57.8 NC_004065.1 + 31035 0.66 0.932085
Target:  5'- cCGCG-GCCCUgCCGAGcGCCagGAGUcuguugacggcguacGCCu -3'
miRNA:   3'- cGCGCuUGGGA-GGCUC-CGG--CUCA---------------UGG- -5'
15718 5' -57.8 NC_004065.1 + 48163 0.66 0.930142
Target:  5'- -aGgGAACCUUCuCGAGGCgucCGA-UACCg -3'
miRNA:   3'- cgCgCUUGGGAG-GCUCCG---GCUcAUGG- -5'
15718 5' -57.8 NC_004065.1 + 161377 0.66 0.930142
Target:  5'- uGCGCGuACgCCUC---GGCCGccuGUGCCa -3'
miRNA:   3'- -CGCGCuUG-GGAGgcuCCGGCu--CAUGG- -5'
15718 5' -57.8 NC_004065.1 + 211342 0.66 0.930142
Target:  5'- gGCcUGAGCCgaCCGAGGCgGAcucGUGCg -3'
miRNA:   3'- -CGcGCUUGGgaGGCUCCGgCU---CAUGg -5'
15718 5' -57.8 NC_004065.1 + 113636 0.66 0.930142
Target:  5'- -aGCGGACC--CCGucGUCGAGUAUCu -3'
miRNA:   3'- cgCGCUUGGgaGGCucCGGCUCAUGG- -5'
15718 5' -57.8 NC_004065.1 + 125736 0.66 0.930142
Target:  5'- uGCGCGAACgCCUcagacagggcCCGGcGUCGuGUAUCg -3'
miRNA:   3'- -CGCGCUUG-GGA----------GGCUcCGGCuCAUGG- -5'
15718 5' -57.8 NC_004065.1 + 201982 0.66 0.930142
Target:  5'- cGCGaGAACUCgUCGAGGUCGuugGCCg -3'
miRNA:   3'- -CGCgCUUGGGaGGCUCCGGCucaUGG- -5'
15718 5' -57.8 NC_004065.1 + 116792 0.66 0.930142
Target:  5'- uGCGCG-GCCaCguaCGuguuGGCCG-GUACCg -3'
miRNA:   3'- -CGCGCuUGG-Gag-GCu---CCGGCuCAUGG- -5'
15718 5' -57.8 NC_004065.1 + 165323 0.66 0.930142
Target:  5'- cGCGUGua--CUCCGA-GCCGAGcUGCUg -3'
miRNA:   3'- -CGCGCuuggGAGGCUcCGGCUC-AUGG- -5'
15718 5' -57.8 NC_004065.1 + 44766 0.66 0.925134
Target:  5'- aGCcCGGGCCagggucgUCCGAGGCCuGG-GCCg -3'
miRNA:   3'- -CGcGCUUGGg------AGGCUCCGGcUCaUGG- -5'
15718 5' -57.8 NC_004065.1 + 180936 0.66 0.925134
Target:  5'- -aGCuAugUCUCCGAGcgcGCCG-GUACCu -3'
miRNA:   3'- cgCGcUugGGAGGCUC---CGGCuCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.