miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1572 5' -55.6 NC_001347.2 + 158180 0.66 0.970818
Target:  5'- -aCGCGCGCuCGCuGGUGGC-CGuggucugucGGCAGu -3'
miRNA:   3'- agGUGCGCG-GCG-CCACUGuGU---------UUGUC- -5'
1572 5' -55.6 NC_001347.2 + 147898 0.66 0.970818
Target:  5'- gCCAUugGgGCCGUgGGUGGCGCGGugGc -3'
miRNA:   3'- aGGUG--CgCGGCG-CCACUGUGUUugUc -5'
1572 5' -55.6 NC_001347.2 + 168478 0.66 0.970818
Target:  5'- cUCCGC-CGCCGUcgugcuGGUGuCGCAGgaaGCGGu -3'
miRNA:   3'- -AGGUGcGCGGCG------CCACuGUGUU---UGUC- -5'
1572 5' -55.6 NC_001347.2 + 197782 0.66 0.970818
Target:  5'- gCCGCGUGCUGCuacgucaccGuGUGACGcCGGGCAa -3'
miRNA:   3'- aGGUGCGCGGCG---------C-CACUGU-GUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 199776 0.66 0.970538
Target:  5'- uUCUugGCGgCGcCGGUGccgccggucucgcGCACGAGCu- -3'
miRNA:   3'- -AGGugCGCgGC-GCCAC-------------UGUGUUUGuc -5'
1572 5' -55.6 NC_001347.2 + 137462 0.66 0.967928
Target:  5'- aCCGCGCGCgugcgugcgCGCGcGUGACguaACAAAUc- -3'
miRNA:   3'- aGGUGCGCG---------GCGC-CACUG---UGUUUGuc -5'
1572 5' -55.6 NC_001347.2 + 197245 0.66 0.967928
Target:  5'- gUCACGCcacaugaaGCCGCGGcGGCGCGuuauaAGCAc -3'
miRNA:   3'- aGGUGCG--------CGGCGCCaCUGUGU-----UUGUc -5'
1572 5' -55.6 NC_001347.2 + 32006 0.66 0.967928
Target:  5'- aUCCA-GCGCUuacuaucuGCGGUGGCACGc---- -3'
miRNA:   3'- -AGGUgCGCGG--------CGCCACUGUGUuuguc -5'
1572 5' -55.6 NC_001347.2 + 124968 0.66 0.967928
Target:  5'- cUCCuuguaGCGCCGaCGGUGAgACccGCGu -3'
miRNA:   3'- -AGGug---CGCGGC-GCCACUgUGuuUGUc -5'
1572 5' -55.6 NC_001347.2 + 39700 0.66 0.967928
Target:  5'- -gCugGCGCCGCcuUGGCGCcacGCAGu -3'
miRNA:   3'- agGugCGCGGCGccACUGUGuu-UGUC- -5'
1572 5' -55.6 NC_001347.2 + 106223 0.66 0.967628
Target:  5'- gCCACGaGCCagacgaggcggcgGCGGUGGCGuuGGCAGc -3'
miRNA:   3'- aGGUGCgCGG-------------CGCCACUGUguUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 128434 0.66 0.96484
Target:  5'- cCCACgGCGCCuGCuGcGUGGCcguCAAGCGGc -3'
miRNA:   3'- aGGUG-CGCGG-CG-C-CACUGu--GUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 108409 0.66 0.96484
Target:  5'- gCCAUGCcaCCGCGGcGACAauCAGcuGCAGg -3'
miRNA:   3'- aGGUGCGc-GGCGCCaCUGU--GUU--UGUC- -5'
1572 5' -55.6 NC_001347.2 + 157808 0.66 0.96484
Target:  5'- aCCAacgGCaGCCGCGGUcGcCGCAGuuGCGGg -3'
miRNA:   3'- aGGUg--CG-CGGCGCCA-CuGUGUU--UGUC- -5'
1572 5' -55.6 NC_001347.2 + 228724 0.66 0.96452
Target:  5'- gCCAC-CGCCGCGGcGgauuuccGCGCGgggGACGGg -3'
miRNA:   3'- aGGUGcGCGGCGCCaC-------UGUGU---UUGUC- -5'
1572 5' -55.6 NC_001347.2 + 17209 0.66 0.961549
Target:  5'- aUCCACGaCGCCuuGGcgGACGaugagGAGCAGg -3'
miRNA:   3'- -AGGUGC-GCGGcgCCa-CUGUg----UUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 48838 0.66 0.961549
Target:  5'- aCCACGCGUCaggGCGGUGcggcguuCGCGuGCAc -3'
miRNA:   3'- aGGUGCGCGG---CGCCACu------GUGUuUGUc -5'
1572 5' -55.6 NC_001347.2 + 66016 0.66 0.961549
Target:  5'- aCCGUGUucaCCGUGGUG-CACGGACAGc -3'
miRNA:   3'- aGGUGCGc--GGCGCCACuGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 96939 0.66 0.958051
Target:  5'- gUCCGCGCcugcacGCCGCcGUGACuGCGAuaauaacggcGCAGc -3'
miRNA:   3'- -AGGUGCG------CGGCGcCACUG-UGUU----------UGUC- -5'
1572 5' -55.6 NC_001347.2 + 136280 0.66 0.958051
Target:  5'- uUCCAC-CGCCGCGGcccaugcccGGCACGGGg-- -3'
miRNA:   3'- -AGGUGcGCGGCGCCa--------CUGUGUUUguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.