miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1572 5' -55.6 NC_001347.2 + 189145 1.08 0.005741
Target:  5'- cUCCACGCGCCGCGGUGACACAAACAGc -3'
miRNA:   3'- -AGGUGCGCGGCGCCACUGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 2482 0.8 0.340223
Target:  5'- cCCGCGCGCCGCGcuGUGggcgcgcgagccGCACGGGCAGu -3'
miRNA:   3'- aGGUGCGCGGCGC--CAC------------UGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 168803 0.78 0.411783
Target:  5'- --gACGCGCgCGCGGUGGC-CAAACGGc -3'
miRNA:   3'- aggUGCGCG-GCGCCACUGuGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 200167 0.77 0.473472
Target:  5'- gCCACGCugGCCGCGGUgagGACAagaAGACGGa -3'
miRNA:   3'- aGGUGCG--CGGCGCCA---CUGUg--UUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 53740 0.76 0.510738
Target:  5'- gCCGCGUGCCGCGgGUGcGCGCAGAa-- -3'
miRNA:   3'- aGGUGCGCGGCGC-CAC-UGUGUUUguc -5'
1572 5' -55.6 NC_001347.2 + 104814 0.75 0.567744
Target:  5'- gCUACGCGCCaaggacugcauccGCGGcGACACGGACAc -3'
miRNA:   3'- aGGUGCGCGG-------------CGCCaCUGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 26053 0.75 0.568727
Target:  5'- gCCGgGCGCUGCGGUcccGACAUggAGACAGu -3'
miRNA:   3'- aGGUgCGCGGCGCCA---CUGUG--UUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 62740 0.75 0.588453
Target:  5'- cCCuCGCGCCGCcccGUGACgACGAGCGGc -3'
miRNA:   3'- aGGuGCGCGGCGc--CACUG-UGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 125542 0.74 0.638177
Target:  5'- gCCGcCG-GCCGCGuGUGAgGCAAACAGc -3'
miRNA:   3'- aGGU-GCgCGGCGC-CACUgUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 22208 0.74 0.638177
Target:  5'- gCCACGCGCU--GGUGGC-CGAACAGc -3'
miRNA:   3'- aGGUGCGCGGcgCCACUGuGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 8044 0.73 0.657091
Target:  5'- gCCACGCGUCGCcagaaaagcagcgGGUGACGC--ACGGc -3'
miRNA:   3'- aGGUGCGCGGCG-------------CCACUGUGuuUGUC- -5'
1572 5' -55.6 NC_001347.2 + 152731 0.72 0.745759
Target:  5'- cUUCGCGCGCCGCcgugagcaucuGcGUGAUGCAGucGCAGg -3'
miRNA:   3'- -AGGUGCGCGGCG-----------C-CACUGUGUU--UGUC- -5'
1572 5' -55.6 NC_001347.2 + 39039 0.72 0.716111
Target:  5'- aUCCACGCGucCCGCGGcgacaguUGACGCAGGu-- -3'
miRNA:   3'- -AGGUGCGC--GGCGCC-------ACUGUGUUUguc -5'
1572 5' -55.6 NC_001347.2 + 8230 0.72 0.755142
Target:  5'- cCCACGcCGCCGUGGgcgGugAUAAcCAGu -3'
miRNA:   3'- aGGUGC-GCGGCGCCa--CugUGUUuGUC- -5'
1572 5' -55.6 NC_001347.2 + 193949 0.72 0.726719
Target:  5'- aCCGCGUGCggauucucUGCGGcGACACGGGCAc -3'
miRNA:   3'- aGGUGCGCG--------GCGCCaCUGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 41167 0.71 0.777224
Target:  5'- aUCCGC-CGCgGCGGUGGCgacugggccgacagcGCAAGCGa -3'
miRNA:   3'- -AGGUGcGCGgCGCCACUG---------------UGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 77851 0.71 0.790673
Target:  5'- aCCugGCGCUGCugcugcaGGUGGC-CGAGCGc -3'
miRNA:   3'- aGGugCGCGGCG-------CCACUGuGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 39641 0.71 0.77359
Target:  5'- cCCGUGUGCCGCGGgcGACAC--GCAGc -3'
miRNA:   3'- aGGUGCGCGGCGCCa-CUGUGuuUGUC- -5'
1572 5' -55.6 NC_001347.2 + 167223 0.71 0.782638
Target:  5'- gCCGgcCGCGCCGCGaGacgGACGCAAgguaaACAGg -3'
miRNA:   3'- aGGU--GCGCGGCGC-Ca--CUGUGUU-----UGUC- -5'
1572 5' -55.6 NC_001347.2 + 86004 0.71 0.764422
Target:  5'- gUCCGC-CGCCGCGGcGcCcgGCAGACAGc -3'
miRNA:   3'- -AGGUGcGCGGCGCCaCuG--UGUUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.