miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1572 5' -55.6 NC_001347.2 + 104438 0.7 0.849755
Target:  5'- gCCGC-CGCCaCGGUG-CACGGACAa -3'
miRNA:   3'- aGGUGcGCGGcGCCACuGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 158798 0.7 0.824974
Target:  5'- -aCAcCGCGCCGggacccaCGGUGGCcaACAAGCGGg -3'
miRNA:   3'- agGU-GCGCGGC-------GCCACUG--UGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 157190 0.7 0.839571
Target:  5'- uUCCAUGUgcagcuggugaucgGCCGCGGUG-CGCu-GCAGc -3'
miRNA:   3'- -AGGUGCG--------------CGGCGCCACuGUGuuUGUC- -5'
1572 5' -55.6 NC_001347.2 + 188071 0.69 0.864801
Target:  5'- cCCACGCaGCCGCuGGacGGCugGAGCuGg -3'
miRNA:   3'- aGGUGCG-CGGCG-CCa-CUGugUUUGuC- -5'
1572 5' -55.6 NC_001347.2 + 80505 0.69 0.885869
Target:  5'- cCCACaCGCCGUGGaagGGCGC--GCAGu -3'
miRNA:   3'- aGGUGcGCGGCGCCa--CUGUGuuUGUC- -5'
1572 5' -55.6 NC_001347.2 + 66839 0.69 0.872029
Target:  5'- -aCugGCaGCCGCGGcgGugGCGAcaACGGg -3'
miRNA:   3'- agGugCG-CGGCGCCa-CugUGUU--UGUC- -5'
1572 5' -55.6 NC_001347.2 + 161099 0.69 0.872029
Target:  5'- aCCACuucaaggaagGUGUCGUGGUGACGCGcgaAGCAu -3'
miRNA:   3'- aGGUG----------CGCGGCGCCACUGUGU---UUGUc -5'
1572 5' -55.6 NC_001347.2 + 77439 0.69 0.872029
Target:  5'- gCUGCGCGacCCGUGcGUGcuGCGCAAGCAGc -3'
miRNA:   3'- aGGUGCGC--GGCGC-CAC--UGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 191043 0.68 0.898858
Target:  5'- gUCCAuCGUGCCGCGGaacuGCGCGAGg-- -3'
miRNA:   3'- -AGGU-GCGCGGCGCCac--UGUGUUUguc -5'
1572 5' -55.6 NC_001347.2 + 94941 0.68 0.916691
Target:  5'- aCCAgGC-CCGUcuUGACGCAGACGGa -3'
miRNA:   3'- aGGUgCGcGGCGccACUGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 4788 0.68 0.916691
Target:  5'- gCCAUGCGgaccaaCGCGGcUGACagcACGAGCGGc -3'
miRNA:   3'- aGGUGCGCg-----GCGCC-ACUG---UGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 1305 0.68 0.916691
Target:  5'- uUCUACGCG-CG-GGUGACGCcgcGCAGc -3'
miRNA:   3'- -AGGUGCGCgGCgCCACUGUGuu-UGUC- -5'
1572 5' -55.6 NC_001347.2 + 169130 0.68 0.922186
Target:  5'- -gCGCGCGCCGCGcugcaGUGGCugGAc--- -3'
miRNA:   3'- agGUGCGCGGCGC-----CACUGugUUuguc -5'
1572 5' -55.6 NC_001347.2 + 196963 0.68 0.91097
Target:  5'- gUCGCGCGCCGCc--GACGCccgAGACGGc -3'
miRNA:   3'- aGGUGCGCGGCGccaCUGUG---UUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 110860 0.68 0.905025
Target:  5'- -gCAuCGCGCCGagguGGUGGCGCGAcACAa -3'
miRNA:   3'- agGU-GCGCGGCg---CCACUGUGUU-UGUc -5'
1572 5' -55.6 NC_001347.2 + 198344 0.68 0.905025
Target:  5'- gCCACGCauauGUCGCGGgugaugaguuucUGGCGCAggUGGg -3'
miRNA:   3'- aGGUGCG----CGGCGCC------------ACUGUGUuuGUC- -5'
1572 5' -55.6 NC_001347.2 + 2141 0.68 0.916691
Target:  5'- --gACGCGCaCGCGGUggucggggcgGACGCGgcAGCAGc -3'
miRNA:   3'- aggUGCGCG-GCGCCA----------CUGUGU--UUGUC- -5'
1572 5' -55.6 NC_001347.2 + 101237 0.68 0.905025
Target:  5'- uUCCACGUgcagguGCCGCGuGUGGC-CAG-CGGc -3'
miRNA:   3'- -AGGUGCG------CGGCGC-CACUGuGUUuGUC- -5'
1572 5' -55.6 NC_001347.2 + 62009 0.68 0.905025
Target:  5'- gUCCGCGUGCUGCuucagGAaCACGAACAc -3'
miRNA:   3'- -AGGUGCGCGGCGcca--CU-GUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 182856 0.67 0.941903
Target:  5'- cUCGCGCGCCGUGGgaucGGCuucgagauCGAGCuGg -3'
miRNA:   3'- aGGUGCGCGGCGCCa---CUGu-------GUUUGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.