miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1572 5' -55.6 NC_001347.2 + 96939 0.66 0.958051
Target:  5'- gUCCGCGCcugcacGCCGCcGUGACuGCGAuaauaacggcGCAGc -3'
miRNA:   3'- -AGGUGCG------CGGCGcCACUG-UGUU----------UGUC- -5'
1572 5' -55.6 NC_001347.2 + 104604 0.66 0.958051
Target:  5'- aCCAuCGCGaaGCGGacGCACAGACu- -3'
miRNA:   3'- aGGU-GCGCggCGCCacUGUGUUUGuc -5'
1572 5' -55.6 NC_001347.2 + 38570 0.66 0.95434
Target:  5'- -aCGCGgGgUGCGGcgccGACGCGAACGGc -3'
miRNA:   3'- agGUGCgCgGCGCCa---CUGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 185358 0.66 0.95434
Target:  5'- gCCGC-CGCCGUGGgGGcCGCGGAgGGa -3'
miRNA:   3'- aGGUGcGCGGCGCCaCU-GUGUUUgUC- -5'
1572 5' -55.6 NC_001347.2 + 164567 0.67 0.952011
Target:  5'- aCCGCcugcuGCGCCGCcgauugcggaccgcaGGggcGACGCAGACAc -3'
miRNA:   3'- aGGUG-----CGCGGCG---------------CCa--CUGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 53065 0.67 0.950414
Target:  5'- gUCugGCGucuCCGUGGUcGACGCuAACGGc -3'
miRNA:   3'- aGGugCGC---GGCGCCA-CUGUGuUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 68695 0.67 0.950414
Target:  5'- aUCCAUGaCGCgGCGGcGcaaaGCGCGAGCGc -3'
miRNA:   3'- -AGGUGC-GCGgCGCCaC----UGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 92035 0.67 0.950414
Target:  5'- aCC-UGCGCCGCGGUcuuagaaccuacGGCGCA--UAGg -3'
miRNA:   3'- aGGuGCGCGGCGCCA------------CUGUGUuuGUC- -5'
1572 5' -55.6 NC_001347.2 + 142847 0.67 0.94627
Target:  5'- cCCGaagguuaGCGCCGCGGcacCAgAGACAGa -3'
miRNA:   3'- aGGUg------CGCGGCGCCacuGUgUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 172271 0.67 0.94627
Target:  5'- -gCGCGUGcCCGUGGUGAauuacgcguggUugGAGCAGc -3'
miRNA:   3'- agGUGCGC-GGCGCCACU-----------GugUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 182856 0.67 0.941903
Target:  5'- cUCGCGCGCCGUGGgaucGGCuucgagauCGAGCuGg -3'
miRNA:   3'- aGGUGCGCGGCGCCa---CUGu-------GUUUGuC- -5'
1572 5' -55.6 NC_001347.2 + 1691 0.67 0.941903
Target:  5'- gCUGCGCGCCGaggaGGcGACGgcgcuCGGACGGg -3'
miRNA:   3'- aGGUGCGCGGCg---CCaCUGU-----GUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 155534 0.67 0.937313
Target:  5'- gCCgACGCGaCCGCuGGUGAUcgACGAggacGCGGa -3'
miRNA:   3'- aGG-UGCGC-GGCG-CCACUG--UGUU----UGUC- -5'
1572 5' -55.6 NC_001347.2 + 168354 0.67 0.937313
Target:  5'- gCCGC-CGCCGCGGUGcCGCc----- -3'
miRNA:   3'- aGGUGcGCGGCGCCACuGUGuuuguc -5'
1572 5' -55.6 NC_001347.2 + 78376 0.67 0.937313
Target:  5'- cCgGCgGCGCCGUGGUGGgAgGAcccGCGGg -3'
miRNA:   3'- aGgUG-CGCGGCGCCACUgUgUU---UGUC- -5'
1572 5' -55.6 NC_001347.2 + 1242 0.67 0.927455
Target:  5'- gCCAUGCGCaaGUGGUcgcagcgcGACGCGGGCAc -3'
miRNA:   3'- aGGUGCGCGg-CGCCA--------CUGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 53960 0.67 0.927455
Target:  5'- aUCCACaG-GCUGCGGUGuC-CGGACGGc -3'
miRNA:   3'- -AGGUG-CgCGGCGCCACuGuGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 93017 0.67 0.927455
Target:  5'- gUCgCAgGCGuCCGCGGcGAuCACGGACGa -3'
miRNA:   3'- -AG-GUgCGC-GGCGCCaCU-GUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 52511 0.67 0.927455
Target:  5'- gUCUGUGCGCCGUGGUG-CugGGuCAGu -3'
miRNA:   3'- -AGGUGCGCGGCGCCACuGugUUuGUC- -5'
1572 5' -55.6 NC_001347.2 + 169130 0.68 0.922186
Target:  5'- -gCGCGCGCCGCGcugcaGUGGCugGAc--- -3'
miRNA:   3'- agGUGCGCGGCGC-----CACUGugUUuguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.