miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1572 5' -55.6 NC_001347.2 + 1242 0.67 0.927455
Target:  5'- gCCAUGCGCaaGUGGUcgcagcgcGACGCGGGCAc -3'
miRNA:   3'- aGGUGCGCGg-CGCCA--------CUGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 1305 0.68 0.916691
Target:  5'- uUCUACGCG-CG-GGUGACGCcgcGCAGc -3'
miRNA:   3'- -AGGUGCGCgGCgCCACUGUGuu-UGUC- -5'
1572 5' -55.6 NC_001347.2 + 1691 0.67 0.941903
Target:  5'- gCUGCGCGCCGaggaGGcGACGgcgcuCGGACGGg -3'
miRNA:   3'- aGGUGCGCGGCg---CCaCUGU-----GUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 2141 0.68 0.916691
Target:  5'- --gACGCGCaCGCGGUggucggggcgGACGCGgcAGCAGc -3'
miRNA:   3'- aggUGCGCG-GCGCCA----------CUGUGU--UUGUC- -5'
1572 5' -55.6 NC_001347.2 + 2482 0.8 0.340223
Target:  5'- cCCGCGCGCCGCGcuGUGggcgcgcgagccGCACGGGCAGu -3'
miRNA:   3'- aGGUGCGCGGCGC--CAC------------UGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 4788 0.68 0.916691
Target:  5'- gCCAUGCGgaccaaCGCGGcUGACagcACGAGCGGc -3'
miRNA:   3'- aGGUGCGCg-----GCGCC-ACUG---UGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 8044 0.73 0.657091
Target:  5'- gCCACGCGUCGCcagaaaagcagcgGGUGACGC--ACGGc -3'
miRNA:   3'- aGGUGCGCGGCG-------------CCACUGUGuuUGUC- -5'
1572 5' -55.6 NC_001347.2 + 8230 0.72 0.755142
Target:  5'- cCCACGcCGCCGUGGgcgGugAUAAcCAGu -3'
miRNA:   3'- aGGUGC-GCGGCGCCa--CugUGUUuGUC- -5'
1572 5' -55.6 NC_001347.2 + 17209 0.66 0.961549
Target:  5'- aUCCACGaCGCCuuGGcgGACGaugagGAGCAGg -3'
miRNA:   3'- -AGGUGC-GCGGcgCCa-CUGUg----UUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 19383 0.66 0.958051
Target:  5'- -gCACGC-CCGCGGacACACGcugaAACAGg -3'
miRNA:   3'- agGUGCGcGGCGCCacUGUGU----UUGUC- -5'
1572 5' -55.6 NC_001347.2 + 22208 0.74 0.638177
Target:  5'- gCCACGCGCU--GGUGGC-CGAACAGc -3'
miRNA:   3'- aGGUGCGCGGcgCCACUGuGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 26053 0.75 0.568727
Target:  5'- gCCGgGCGCUGCGGUcccGACAUggAGACAGu -3'
miRNA:   3'- aGGUgCGCGGCGCCA---CUGUG--UUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 32006 0.66 0.967928
Target:  5'- aUCCA-GCGCUuacuaucuGCGGUGGCACGc---- -3'
miRNA:   3'- -AGGUgCGCGG--------CGCCACUGUGUuuguc -5'
1572 5' -55.6 NC_001347.2 + 38570 0.66 0.95434
Target:  5'- -aCGCGgGgUGCGGcgccGACGCGAACGGc -3'
miRNA:   3'- agGUGCgCgGCGCCa---CUGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 39039 0.72 0.716111
Target:  5'- aUCCACGCGucCCGCGGcgacaguUGACGCAGGu-- -3'
miRNA:   3'- -AGGUGCGC--GGCGCC-------ACUGUGUUUguc -5'
1572 5' -55.6 NC_001347.2 + 39641 0.71 0.77359
Target:  5'- cCCGUGUGCCGCGGgcGACAC--GCAGc -3'
miRNA:   3'- aGGUGCGCGGCGCCa-CUGUGuuUGUC- -5'
1572 5' -55.6 NC_001347.2 + 39700 0.66 0.967928
Target:  5'- -gCugGCGCCGCcuUGGCGCcacGCAGu -3'
miRNA:   3'- agGugCGCGGCGccACUGUGuu-UGUC- -5'
1572 5' -55.6 NC_001347.2 + 41167 0.71 0.777224
Target:  5'- aUCCGC-CGCgGCGGUGGCgacugggccgacagcGCAAGCGa -3'
miRNA:   3'- -AGGUGcGCGgCGCCACUG---------------UGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 48838 0.66 0.961549
Target:  5'- aCCACGCGUCaggGCGGUGcggcguuCGCGuGCAc -3'
miRNA:   3'- aGGUGCGCGG---CGCCACu------GUGUuUGUc -5'
1572 5' -55.6 NC_001347.2 + 52511 0.67 0.927455
Target:  5'- gUCUGUGCGCCGUGGUG-CugGGuCAGu -3'
miRNA:   3'- -AGGUGCGCGGCGCCACuGugUUuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.