miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1572 5' -55.6 NC_001347.2 + 53065 0.67 0.950414
Target:  5'- gUCugGCGucuCCGUGGUcGACGCuAACGGc -3'
miRNA:   3'- aGGugCGC---GGCGCCA-CUGUGuUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 53740 0.76 0.510738
Target:  5'- gCCGCGUGCCGCGgGUGcGCGCAGAa-- -3'
miRNA:   3'- aGGUGCGCGGCGC-CAC-UGUGUUUguc -5'
1572 5' -55.6 NC_001347.2 + 53960 0.67 0.927455
Target:  5'- aUCCACaG-GCUGCGGUGuC-CGGACGGc -3'
miRNA:   3'- -AGGUG-CgCGGCGCCACuGuGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 62009 0.68 0.905025
Target:  5'- gUCCGCGUGCUGCuucagGAaCACGAACAc -3'
miRNA:   3'- -AGGUGCGCGGCGcca--CU-GUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 62740 0.75 0.588453
Target:  5'- cCCuCGCGCCGCcccGUGACgACGAGCGGc -3'
miRNA:   3'- aGGuGCGCGGCGc--CACUG-UGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 66016 0.66 0.961549
Target:  5'- aCCGUGUucaCCGUGGUG-CACGGACAGc -3'
miRNA:   3'- aGGUGCGc--GGCGCCACuGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 66839 0.69 0.872029
Target:  5'- -aCugGCaGCCGCGGcgGugGCGAcaACGGg -3'
miRNA:   3'- agGugCG-CGGCGCCa-CugUGUU--UGUC- -5'
1572 5' -55.6 NC_001347.2 + 68695 0.67 0.950414
Target:  5'- aUCCAUGaCGCgGCGGcGcaaaGCGCGAGCGc -3'
miRNA:   3'- -AGGUGC-GCGgCGCCaC----UGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 77439 0.69 0.872029
Target:  5'- gCUGCGCGacCCGUGcGUGcuGCGCAAGCAGc -3'
miRNA:   3'- aGGUGCGC--GGCGC-CAC--UGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 77851 0.71 0.790673
Target:  5'- aCCugGCGCUGCugcugcaGGUGGC-CGAGCGc -3'
miRNA:   3'- aGGugCGCGGCG-------CCACUGuGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 78376 0.67 0.937313
Target:  5'- cCgGCgGCGCCGUGGUGGgAgGAcccGCGGg -3'
miRNA:   3'- aGgUG-CGCGGCGCCACUgUgUU---UGUC- -5'
1572 5' -55.6 NC_001347.2 + 80505 0.69 0.885869
Target:  5'- cCCACaCGCCGUGGaagGGCGC--GCAGu -3'
miRNA:   3'- aGGUGcGCGGCGCCa--CUGUGuuUGUC- -5'
1572 5' -55.6 NC_001347.2 + 86004 0.71 0.764422
Target:  5'- gUCCGC-CGCCGCGGcGcCcgGCAGACAGc -3'
miRNA:   3'- -AGGUGcGCGGCGCCaCuG--UGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 92035 0.67 0.950414
Target:  5'- aCC-UGCGCCGCGGUcuuagaaccuacGGCGCA--UAGg -3'
miRNA:   3'- aGGuGCGCGGCGCCA------------CUGUGUuuGUC- -5'
1572 5' -55.6 NC_001347.2 + 93017 0.67 0.927455
Target:  5'- gUCgCAgGCGuCCGCGGcGAuCACGGACGa -3'
miRNA:   3'- -AG-GUgCGC-GGCGCCaCU-GUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 94941 0.68 0.916691
Target:  5'- aCCAgGC-CCGUcuUGACGCAGACGGa -3'
miRNA:   3'- aGGUgCGcGGCGccACUGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 96939 0.66 0.958051
Target:  5'- gUCCGCGCcugcacGCCGCcGUGACuGCGAuaauaacggcGCAGc -3'
miRNA:   3'- -AGGUGCG------CGGCGcCACUG-UGUU----------UGUC- -5'
1572 5' -55.6 NC_001347.2 + 101237 0.68 0.905025
Target:  5'- uUCCACGUgcagguGCCGCGuGUGGC-CAG-CGGc -3'
miRNA:   3'- -AGGUGCG------CGGCGC-CACUGuGUUuGUC- -5'
1572 5' -55.6 NC_001347.2 + 104438 0.7 0.849755
Target:  5'- gCCGC-CGCCaCGGUG-CACGGACAa -3'
miRNA:   3'- aGGUGcGCGGcGCCACuGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 104604 0.66 0.958051
Target:  5'- aCCAuCGCGaaGCGGacGCACAGACu- -3'
miRNA:   3'- aGGU-GCGCggCGCCacUGUGUUUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.