miRNA display CGI


Results 41 - 60 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1572 5' -55.6 NC_001347.2 + 104814 0.75 0.567744
Target:  5'- gCUACGCGCCaaggacugcauccGCGGcGACACGGACAc -3'
miRNA:   3'- aGGUGCGCGG-------------CGCCaCUGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 106223 0.66 0.967628
Target:  5'- gCCACGaGCCagacgaggcggcgGCGGUGGCGuuGGCAGc -3'
miRNA:   3'- aGGUGCgCGG-------------CGCCACUGUguUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 108409 0.66 0.96484
Target:  5'- gCCAUGCcaCCGCGGcGACAauCAGcuGCAGg -3'
miRNA:   3'- aGGUGCGc-GGCGCCaCUGU--GUU--UGUC- -5'
1572 5' -55.6 NC_001347.2 + 110860 0.68 0.905025
Target:  5'- -gCAuCGCGCCGagguGGUGGCGCGAcACAa -3'
miRNA:   3'- agGU-GCGCGGCg---CCACUGUGUU-UGUc -5'
1572 5' -55.6 NC_001347.2 + 124968 0.66 0.967928
Target:  5'- cUCCuuguaGCGCCGaCGGUGAgACccGCGu -3'
miRNA:   3'- -AGGug---CGCGGC-GCCACUgUGuuUGUc -5'
1572 5' -55.6 NC_001347.2 + 125542 0.74 0.638177
Target:  5'- gCCGcCG-GCCGCGuGUGAgGCAAACAGc -3'
miRNA:   3'- aGGU-GCgCGGCGC-CACUgUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 128434 0.66 0.96484
Target:  5'- cCCACgGCGCCuGCuGcGUGGCcguCAAGCGGc -3'
miRNA:   3'- aGGUG-CGCGG-CG-C-CACUGu--GUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 136280 0.66 0.958051
Target:  5'- uUCCAC-CGCCGCGGcccaugcccGGCACGGGg-- -3'
miRNA:   3'- -AGGUGcGCGGCGCCa--------CUGUGUUUguc -5'
1572 5' -55.6 NC_001347.2 + 137462 0.66 0.967928
Target:  5'- aCCGCGCGCgugcgugcgCGCGcGUGACguaACAAAUc- -3'
miRNA:   3'- aGGUGCGCG---------GCGC-CACUG---UGUUUGuc -5'
1572 5' -55.6 NC_001347.2 + 142847 0.67 0.94627
Target:  5'- cCCGaagguuaGCGCCGCGGcacCAgAGACAGa -3'
miRNA:   3'- aGGUg------CGCGGCGCCacuGUgUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 147898 0.66 0.970818
Target:  5'- gCCAUugGgGCCGUgGGUGGCGCGGugGc -3'
miRNA:   3'- aGGUG--CgCGGCG-CCACUGUGUUugUc -5'
1572 5' -55.6 NC_001347.2 + 152731 0.72 0.745759
Target:  5'- cUUCGCGCGCCGCcgugagcaucuGcGUGAUGCAGucGCAGg -3'
miRNA:   3'- -AGGUGCGCGGCG-----------C-CACUGUGUU--UGUC- -5'
1572 5' -55.6 NC_001347.2 + 155534 0.67 0.937313
Target:  5'- gCCgACGCGaCCGCuGGUGAUcgACGAggacGCGGa -3'
miRNA:   3'- aGG-UGCGC-GGCG-CCACUG--UGUU----UGUC- -5'
1572 5' -55.6 NC_001347.2 + 157190 0.7 0.839571
Target:  5'- uUCCAUGUgcagcuggugaucgGCCGCGGUG-CGCu-GCAGc -3'
miRNA:   3'- -AGGUGCG--------------CGGCGCCACuGUGuuUGUC- -5'
1572 5' -55.6 NC_001347.2 + 157808 0.66 0.96484
Target:  5'- aCCAacgGCaGCCGCGGUcGcCGCAGuuGCGGg -3'
miRNA:   3'- aGGUg--CG-CGGCGCCA-CuGUGUU--UGUC- -5'
1572 5' -55.6 NC_001347.2 + 158180 0.66 0.970818
Target:  5'- -aCGCGCGCuCGCuGGUGGC-CGuggucugucGGCAGu -3'
miRNA:   3'- agGUGCGCG-GCG-CCACUGuGU---------UUGUC- -5'
1572 5' -55.6 NC_001347.2 + 158798 0.7 0.824974
Target:  5'- -aCAcCGCGCCGggacccaCGGUGGCcaACAAGCGGg -3'
miRNA:   3'- agGU-GCGCGGC-------GCCACUG--UGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 161099 0.69 0.872029
Target:  5'- aCCACuucaaggaagGUGUCGUGGUGACGCGcgaAGCAu -3'
miRNA:   3'- aGGUG----------CGCGGCGCCACUGUGU---UUGUc -5'
1572 5' -55.6 NC_001347.2 + 164567 0.67 0.952011
Target:  5'- aCCGCcugcuGCGCCGCcgauugcggaccgcaGGggcGACGCAGACAc -3'
miRNA:   3'- aGGUG-----CGCGGCG---------------CCa--CUGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 167223 0.71 0.782638
Target:  5'- gCCGgcCGCGCCGCGaGacgGACGCAAgguaaACAGg -3'
miRNA:   3'- aGGU--GCGCGGCGC-Ca--CUGUGUU-----UGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.