miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1572 5' -55.6 NC_001347.2 + 228724 0.66 0.96452
Target:  5'- gCCAC-CGCCGCGGcGgauuuccGCGCGgggGACGGg -3'
miRNA:   3'- aGGUGcGCGGCGCCaC-------UGUGU---UUGUC- -5'
1572 5' -55.6 NC_001347.2 + 200167 0.77 0.473472
Target:  5'- gCCACGCugGCCGCGGUgagGACAagaAGACGGa -3'
miRNA:   3'- aGGUGCG--CGGCGCCA---CUGUg--UUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 199776 0.66 0.970538
Target:  5'- uUCUugGCGgCGcCGGUGccgccggucucgcGCACGAGCu- -3'
miRNA:   3'- -AGGugCGCgGC-GCCAC-------------UGUGUUUGuc -5'
1572 5' -55.6 NC_001347.2 + 198344 0.68 0.905025
Target:  5'- gCCACGCauauGUCGCGGgugaugaguuucUGGCGCAggUGGg -3'
miRNA:   3'- aGGUGCG----CGGCGCC------------ACUGUGUuuGUC- -5'
1572 5' -55.6 NC_001347.2 + 197782 0.66 0.970818
Target:  5'- gCCGCGUGCUGCuacgucaccGuGUGACGcCGGGCAa -3'
miRNA:   3'- aGGUGCGCGGCG---------C-CACUGU-GUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 197245 0.66 0.967928
Target:  5'- gUCACGCcacaugaaGCCGCGGcGGCGCGuuauaAGCAc -3'
miRNA:   3'- aGGUGCG--------CGGCGCCaCUGUGU-----UUGUc -5'
1572 5' -55.6 NC_001347.2 + 196963 0.68 0.91097
Target:  5'- gUCGCGCGCCGCc--GACGCccgAGACGGc -3'
miRNA:   3'- aGGUGCGCGGCGccaCUGUG---UUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 193949 0.72 0.726719
Target:  5'- aCCGCGUGCggauucucUGCGGcGACACGGGCAc -3'
miRNA:   3'- aGGUGCGCG--------GCGCCaCUGUGUUUGUc -5'
1572 5' -55.6 NC_001347.2 + 191043 0.68 0.898858
Target:  5'- gUCCAuCGUGCCGCGGaacuGCGCGAGg-- -3'
miRNA:   3'- -AGGU-GCGCGGCGCCac--UGUGUUUguc -5'
1572 5' -55.6 NC_001347.2 + 189145 1.08 0.005741
Target:  5'- cUCCACGCGCCGCGGUGACACAAACAGc -3'
miRNA:   3'- -AGGUGCGCGGCGCCACUGUGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 188071 0.69 0.864801
Target:  5'- cCCACGCaGCCGCuGGacGGCugGAGCuGg -3'
miRNA:   3'- aGGUGCG-CGGCG-CCa-CUGugUUUGuC- -5'
1572 5' -55.6 NC_001347.2 + 185358 0.66 0.95434
Target:  5'- gCCGC-CGCCGUGGgGGcCGCGGAgGGa -3'
miRNA:   3'- aGGUGcGCGGCGCCaCU-GUGUUUgUC- -5'
1572 5' -55.6 NC_001347.2 + 182856 0.67 0.941903
Target:  5'- cUCGCGCGCCGUGGgaucGGCuucgagauCGAGCuGg -3'
miRNA:   3'- aGGUGCGCGGCGCCa---CUGu-------GUUUGuC- -5'
1572 5' -55.6 NC_001347.2 + 172271 0.67 0.94627
Target:  5'- -gCGCGUGcCCGUGGUGAauuacgcguggUugGAGCAGc -3'
miRNA:   3'- agGUGCGC-GGCGCCACU-----------GugUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 169130 0.68 0.922186
Target:  5'- -gCGCGCGCCGCGcugcaGUGGCugGAc--- -3'
miRNA:   3'- agGUGCGCGGCGC-----CACUGugUUuguc -5'
1572 5' -55.6 NC_001347.2 + 168803 0.78 0.411783
Target:  5'- --gACGCGCgCGCGGUGGC-CAAACGGc -3'
miRNA:   3'- aggUGCGCG-GCGCCACUGuGUUUGUC- -5'
1572 5' -55.6 NC_001347.2 + 168478 0.66 0.970818
Target:  5'- cUCCGC-CGCCGUcgugcuGGUGuCGCAGgaaGCGGu -3'
miRNA:   3'- -AGGUGcGCGGCG------CCACuGUGUU---UGUC- -5'
1572 5' -55.6 NC_001347.2 + 168354 0.67 0.937313
Target:  5'- gCCGC-CGCCGCGGUGcCGCc----- -3'
miRNA:   3'- aGGUGcGCGGCGCCACuGUGuuuguc -5'
1572 5' -55.6 NC_001347.2 + 167223 0.71 0.782638
Target:  5'- gCCGgcCGCGCCGCGaGacgGACGCAAgguaaACAGg -3'
miRNA:   3'- aGGU--GCGCGGCGC-Ca--CUGUGUU-----UGUC- -5'
1572 5' -55.6 NC_001347.2 + 164567 0.67 0.952011
Target:  5'- aCCGCcugcuGCGCCGCcgauugcggaccgcaGGggcGACGCAGACAc -3'
miRNA:   3'- aGGUG-----CGCGGCG---------------CCa--CUGUGUUUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.