Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1572 | 5' | -55.6 | NC_001347.2 | + | 147898 | 0.66 | 0.970818 |
Target: 5'- gCCAUugGgGCCGUgGGUGGCGCGGugGc -3' miRNA: 3'- aGGUG--CgCGGCG-CCACUGUGUUugUc -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 199776 | 0.66 | 0.970538 |
Target: 5'- uUCUugGCGgCGcCGGUGccgccggucucgcGCACGAGCu- -3' miRNA: 3'- -AGGugCGCgGC-GCCAC-------------UGUGUUUGuc -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 137462 | 0.66 | 0.967928 |
Target: 5'- aCCGCGCGCgugcgugcgCGCGcGUGACguaACAAAUc- -3' miRNA: 3'- aGGUGCGCG---------GCGC-CACUG---UGUUUGuc -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 168478 | 0.66 | 0.970818 |
Target: 5'- cUCCGC-CGCCGUcgugcuGGUGuCGCAGgaaGCGGu -3' miRNA: 3'- -AGGUGcGCGGCG------CCACuGUGUU---UGUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 197782 | 0.66 | 0.970818 |
Target: 5'- gCCGCGUGCUGCuacgucaccGuGUGACGcCGGGCAa -3' miRNA: 3'- aGGUGCGCGGCG---------C-CACUGU-GUUUGUc -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 108409 | 0.66 | 0.96484 |
Target: 5'- gCCAUGCcaCCGCGGcGACAauCAGcuGCAGg -3' miRNA: 3'- aGGUGCGc-GGCGCCaCUGU--GUU--UGUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 157808 | 0.66 | 0.96484 |
Target: 5'- aCCAacgGCaGCCGCGGUcGcCGCAGuuGCGGg -3' miRNA: 3'- aGGUg--CG-CGGCGCCA-CuGUGUU--UGUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 172271 | 0.67 | 0.94627 |
Target: 5'- -gCGCGUGcCCGUGGUGAauuacgcguggUugGAGCAGc -3' miRNA: 3'- agGUGCGC-GGCGCCACU-----------GugUUUGUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 92035 | 0.67 | 0.950414 |
Target: 5'- aCC-UGCGCCGCGGUcuuagaaccuacGGCGCA--UAGg -3' miRNA: 3'- aGGuGCGCGGCGCCA------------CUGUGUuuGUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 164567 | 0.67 | 0.952011 |
Target: 5'- aCCGCcugcuGCGCCGCcgauugcggaccgcaGGggcGACGCAGACAc -3' miRNA: 3'- aGGUG-----CGCGGCG---------------CCa--CUGUGUUUGUc -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 68695 | 0.67 | 0.950414 |
Target: 5'- aUCCAUGaCGCgGCGGcGcaaaGCGCGAGCGc -3' miRNA: 3'- -AGGUGC-GCGgCGCCaC----UGUGUUUGUc -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 53065 | 0.67 | 0.950414 |
Target: 5'- gUCugGCGucuCCGUGGUcGACGCuAACGGc -3' miRNA: 3'- aGGugCGC---GGCGCCA-CUGUGuUUGUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 185358 | 0.66 | 0.95434 |
Target: 5'- gCCGC-CGCCGUGGgGGcCGCGGAgGGa -3' miRNA: 3'- aGGUGcGCGGCGCCaCU-GUGUUUgUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 19383 | 0.66 | 0.958051 |
Target: 5'- -gCACGC-CCGCGGacACACGcugaAACAGg -3' miRNA: 3'- agGUGCGcGGCGCCacUGUGU----UUGUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 38570 | 0.66 | 0.95434 |
Target: 5'- -aCGCGgGgUGCGGcgccGACGCGAACGGc -3' miRNA: 3'- agGUGCgCgGCGCCa---CUGUGUUUGUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 136280 | 0.66 | 0.958051 |
Target: 5'- uUCCAC-CGCCGCGGcccaugcccGGCACGGGg-- -3' miRNA: 3'- -AGGUGcGCGGCGCCa--------CUGUGUUUguc -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 96939 | 0.66 | 0.958051 |
Target: 5'- gUCCGCGCcugcacGCCGCcGUGACuGCGAuaauaacggcGCAGc -3' miRNA: 3'- -AGGUGCG------CGGCGcCACUG-UGUU----------UGUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 104604 | 0.66 | 0.958051 |
Target: 5'- aCCAuCGCGaaGCGGacGCACAGACu- -3' miRNA: 3'- aGGU-GCGCggCGCCacUGUGUUUGuc -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 17209 | 0.66 | 0.961549 |
Target: 5'- aUCCACGaCGCCuuGGcgGACGaugagGAGCAGg -3' miRNA: 3'- -AGGUGC-GCGGcgCCa-CUGUg----UUUGUC- -5' |
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1572 | 5' | -55.6 | NC_001347.2 | + | 48838 | 0.66 | 0.961549 |
Target: 5'- aCCACGCGUCaggGCGGUGcggcguuCGCGuGCAc -3' miRNA: 3'- aGGUGCGCGG---CGCCACu------GUGUuUGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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