miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 98483 0.66 0.973927
Target:  5'- uGGCCGUGuacauguGCUcgCCGGAG-AGGAGu- -3'
miRNA:   3'- gCUGGCGCu------CGA--GGCCUCuUCCUUug -5'
15720 3' -55.4 NC_004065.1 + 96665 0.66 0.97126
Target:  5'- gCGuCgGCGGGCUCgcccgaCGGAGGaucgugcgggcgAGGGGACg -3'
miRNA:   3'- -GCuGgCGCUCGAG------GCCUCU------------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 92033 0.66 0.97126
Target:  5'- gGACCGCGGGCUCUuGGcgcgcucGAGGCa -3'
miRNA:   3'- gCUGGCGCUCGAGG-CCucuuc--CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 19646 0.66 0.968402
Target:  5'- aGGCUGCGGGCagCCaaGGGAAGGGu-- -3'
miRNA:   3'- gCUGGCGCUCGa-GGc-CUCUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 152994 0.66 0.965348
Target:  5'- cCGAuCCGCGccAGCUCCGaGucGAGGucGCa -3'
miRNA:   3'- -GCU-GGCGC--UCGAGGC-CucUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 71826 0.66 0.965348
Target:  5'- aCGACauaCGCGAGCUgCUGGuggagagcGGAGGGAu-- -3'
miRNA:   3'- -GCUG---GCGCUCGA-GGCC--------UCUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 77984 0.66 0.965348
Target:  5'- uGGCCGCGGcgagccGCcCCGGGacGGAGGAGc- -3'
miRNA:   3'- gCUGGCGCU------CGaGGCCU--CUUCCUUug -5'
15720 3' -55.4 NC_004065.1 + 176877 0.66 0.965348
Target:  5'- aCGGcucCCGuCGAgGCUCUGG-GAAGGGAGa -3'
miRNA:   3'- -GCU---GGC-GCU-CGAGGCCuCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 192687 0.66 0.965348
Target:  5'- --uCUGCGGugggcuGCUCCGGAuGAcGGAAGCu -3'
miRNA:   3'- gcuGGCGCU------CGAGGCCU-CUuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 201292 0.66 0.965348
Target:  5'- uGGCCcucCG-GCggCCGGGGGAGGAGGa -3'
miRNA:   3'- gCUGGc--GCuCGa-GGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 180130 0.66 0.965032
Target:  5'- gGACgGCGGGUUCCGucuGGAGGucgauucGAGCa -3'
miRNA:   3'- gCUGgCGCUCGAGGCcu-CUUCC-------UUUG- -5'
15720 3' -55.4 NC_004065.1 + 39758 0.66 0.965032
Target:  5'- gCGACUuuccgcaGCGGcucGgUCCGGGGAAGGAuuguGCu -3'
miRNA:   3'- -GCUGG-------CGCU---CgAGGCCUCUUCCUu---UG- -5'
15720 3' -55.4 NC_004065.1 + 195793 0.66 0.962093
Target:  5'- gGACCGCGGGCcCUGcgcuGAAGGGu-- -3'
miRNA:   3'- gCUGGCGCUCGaGGCcu--CUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 143932 0.66 0.962093
Target:  5'- uCGACCGUGAGggggGGAGAaaGGGAGAa -3'
miRNA:   3'- -GCUGGCGCUCgaggCCUCU--UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 68468 0.66 0.962093
Target:  5'- -aGCCuggGCGAGCUgcugUCGGugaAGAGGGAGACc -3'
miRNA:   3'- gcUGG---CGCUCGA----GGCC---UCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 141607 0.66 0.962093
Target:  5'- aCGGCgGCGGGCUCCGcugccGgcGGugGCg -3'
miRNA:   3'- -GCUGgCGCUCGAGGCcu---CuuCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 93772 0.66 0.961756
Target:  5'- aGGCgGCGAGacauCUCCcgucgucGGuGGAGGAGACc -3'
miRNA:   3'- gCUGgCGCUC----GAGG-------CCuCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 138338 0.66 0.958631
Target:  5'- uGGCCGCGAugucGCUCUGcGAcAAGGcGACc -3'
miRNA:   3'- gCUGGCGCU----CGAGGC-CUcUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 159508 0.66 0.958631
Target:  5'- gCGcCUGC-AGCUCCGucGAGAAGGgcGCc -3'
miRNA:   3'- -GCuGGCGcUCGAGGC--CUCUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 74892 0.66 0.958631
Target:  5'- cCGACCucguacucGCGGGCg-CGGAgGAAGGcGACg -3'
miRNA:   3'- -GCUGG--------CGCUCGagGCCU-CUUCCuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.