Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15720 | 3' | -55.4 | NC_004065.1 | + | 192546 | 0.68 | 0.919839 |
Target: 5'- gGuCCGCacagcccugcgggauGAGCUUCGGAGAAGGc--- -3' miRNA: 3'- gCuGGCG---------------CUCGAGGCCUCUUCCuuug -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 184721 | 0.68 | 0.906048 |
Target: 5'- uGGCUGcCGAuGCUgucgaUCGGAGGAGGAAGa -3' miRNA: 3'- gCUGGC-GCU-CGA-----GGCCUCUUCCUUUg -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 49396 | 0.68 | 0.911951 |
Target: 5'- aCGuuuuCCGCGGcgaaauccucGUUCCGGAGAcGGAggGACg -3' miRNA: 3'- -GCu---GGCGCU----------CGAGGCCUCUuCCU--UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 60540 | 0.68 | 0.911951 |
Target: 5'- -aGCCGaCGaAGCcgCCGGAGAcgacGGAGACg -3' miRNA: 3'- gcUGGC-GC-UCGa-GGCCUCUu---CCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 119609 | 0.68 | 0.923084 |
Target: 5'- gCGGCUGgGAGUUCUGugccGGGAcGGGGAGCg -3' miRNA: 3'- -GCUGGCgCUCGAGGC----CUCU-UCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 227988 | 0.68 | 0.928311 |
Target: 5'- gGACCGaGAGCcagCCGGAGAGGu---- -3' miRNA: 3'- gCUGGCgCUCGa--GGCCUCUUCcuuug -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 127225 | 0.68 | 0.91763 |
Target: 5'- gCGGCCGCGAGgaUCGGGcgcgguGgcGGGGAUg -3' miRNA: 3'- -GCUGGCGCUCgaGGCCU------CuuCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 53478 | 0.68 | 0.923084 |
Target: 5'- aGACCGcCGAGCucUCCGGgaAGAuGGuGACc -3' miRNA: 3'- gCUGGC-GCUCG--AGGCC--UCUuCCuUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 57732 | 0.68 | 0.91763 |
Target: 5'- -cACCGCGGGCgagaGGAGGggAGGAGAg -3' miRNA: 3'- gcUGGCGCUCGagg-CCUCU--UCCUUUg -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 187990 | 0.68 | 0.928311 |
Target: 5'- gCGGCCGCGcgcaacauGGCUCgCGGAGGuccgcgacGGuAGACa -3' miRNA: 3'- -GCUGGCGC--------UCGAG-GCCUCUu-------CC-UUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 135767 | 0.68 | 0.933312 |
Target: 5'- uGGCuCGUGAacgGCaCCGGAGggGGcuGCa -3' miRNA: 3'- gCUG-GCGCU---CGaGGCCUCuuCCuuUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 59984 | 0.68 | 0.91763 |
Target: 5'- uCGGCC--GAGCagCCGGugauGAAGGAGGCg -3' miRNA: 3'- -GCUGGcgCUCGa-GGCCu---CUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 197525 | 0.68 | 0.923084 |
Target: 5'- cCGGCCGCGcGC---GGuAGAAGGGGACg -3' miRNA: 3'- -GCUGGCGCuCGaggCC-UCUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 4660 | 0.69 | 0.893578 |
Target: 5'- -cGCCGCGGGCgUCCaGAGAcagAGGAcuccGGCg -3' miRNA: 3'- gcUGGCGCUCG-AGGcCUCU---UCCU----UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 97617 | 0.69 | 0.896143 |
Target: 5'- aCGugUGCGAggagcacauccaggcGUUCuCGGAGAAGGGcGACg -3' miRNA: 3'- -GCugGCGCU---------------CGAG-GCCUCUUCCU-UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 163864 | 0.69 | 0.887017 |
Target: 5'- aCGAUC-CGAGa-CCGGAGAGGGAu-- -3' miRNA: 3'- -GCUGGcGCUCgaGGCCUCUUCCUuug -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 150264 | 0.69 | 0.873259 |
Target: 5'- gGAUCGUGGGCUCCGcGuAGAu-GAAACg -3' miRNA: 3'- gCUGGCGCUCGAGGC-C-UCUucCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 142927 | 0.69 | 0.880243 |
Target: 5'- cCGGCCGuCGAGUUCCGGcaccAGGGccAGCu -3' miRNA: 3'- -GCUGGC-GCUCGAGGCCucu-UCCU--UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 91205 | 0.69 | 0.893578 |
Target: 5'- gCGugCGCGgcaucGGCgccgCCGGAGAAGaGAGu- -3' miRNA: 3'- -GCugGCGC-----UCGa---GGCCUCUUC-CUUug -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 130758 | 0.69 | 0.9024 |
Target: 5'- gCGACCGCGAGCaguacaCCGacGAGAGGcuacggcucgacugcGAGACg -3' miRNA: 3'- -GCUGGCGCUCGa-----GGC--CUCUUC---------------CUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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