Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15720 | 3' | -55.4 | NC_004065.1 | + | 83582 | 0.71 | 0.810511 |
Target: 5'- gCGACgGCGGGgaagCCGGGGAAGaAGACg -3' miRNA: 3'- -GCUGgCGCUCga--GGCCUCUUCcUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 226197 | 0.71 | 0.801904 |
Target: 5'- aGGgCGCGGGCUCCacGGAGAccucGGAAGa -3' miRNA: 3'- gCUgGCGCUCGAGG--CCUCUu---CCUUUg -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 195259 | 0.7 | 0.866071 |
Target: 5'- gCGGCCGCGAucugGC-CCGGc--GGGAAACu -3' miRNA: 3'- -GCUGGCGCU----CGaGGCCucuUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 59085 | 0.7 | 0.851103 |
Target: 5'- aGAUCGCGGcGCgCCGGcgaaAGAAGGAcACg -3' miRNA: 3'- gCUGGCGCU-CGaGGCC----UCUUCCUuUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 76973 | 0.7 | 0.843334 |
Target: 5'- uCGACCGacucCGGGCgggagacgaugCUGGAGGAGGAGGa -3' miRNA: 3'- -GCUGGC----GCUCGa----------GGCCUCUUCCUUUg -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 75574 | 0.7 | 0.827259 |
Target: 5'- gCGGCCGUGAcguucGUgucgCCGGcGGggGGAGGCc -3' miRNA: 3'- -GCUGGCGCU-----CGa---GGCC-UCuuCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 107330 | 0.7 | 0.858684 |
Target: 5'- aCGGgucCCGUGAGC-UgGGAGAAgGGAGACg -3' miRNA: 3'- -GCU---GGCGCUCGaGgCCUCUU-CCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 144508 | 0.7 | 0.843334 |
Target: 5'- gCGACUuCGGGCgcggcgaCCGGAaaGAAGGAAGCc -3' miRNA: 3'- -GCUGGcGCUCGa------GGCCU--CUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 60582 | 0.7 | 0.843334 |
Target: 5'- aGACCGCGgaaGGCgccCCGGAcGAAgaguucGGAAACg -3' miRNA: 3'- gCUGGCGC---UCGa--GGCCU-CUU------CCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 142556 | 0.7 | 0.835384 |
Target: 5'- cCGGUgGCGGG-UCCGGAGAucuaucGGGAGACg -3' miRNA: 3'- -GCUGgCGCUCgAGGCCUCU------UCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 38964 | 0.7 | 0.835384 |
Target: 5'- cCGGCgCGgGGGUUCUGGuGGAAGGuGACg -3' miRNA: 3'- -GCUG-GCgCUCGAGGCC-UCUUCCuUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 60122 | 0.7 | 0.843334 |
Target: 5'- cCGGCCGCGuacaGGCUCUuaGGGAacuuGGGGAACg -3' miRNA: 3'- -GCUGGCGC----UCGAGGc-CUCU----UCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 97617 | 0.69 | 0.896143 |
Target: 5'- aCGugUGCGAggagcacauccaggcGUUCuCGGAGAAGGGcGACg -3' miRNA: 3'- -GCugGCGCU---------------CGAG-GCCUCUUCCU-UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 142927 | 0.69 | 0.880243 |
Target: 5'- cCGGCCGuCGAGUUCCGGcaccAGGGccAGCu -3' miRNA: 3'- -GCUGGC-GCUCGAGGCCucu-UCCU--UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 4660 | 0.69 | 0.893578 |
Target: 5'- -cGCCGCGGGCgUCCaGAGAcagAGGAcuccGGCg -3' miRNA: 3'- gcUGGCGCUCG-AGGcCUCU---UCCU----UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 130758 | 0.69 | 0.9024 |
Target: 5'- gCGACCGCGAGCaguacaCCGacGAGAGGcuacggcucgacugcGAGACg -3' miRNA: 3'- -GCUGGCGCUCGa-----GGC--CUCUUC---------------CUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 91205 | 0.69 | 0.893578 |
Target: 5'- gCGugCGCGgcaucGGCgccgCCGGAGAAGaGAGu- -3' miRNA: 3'- -GCugGCGC-----UCGa---GGCCUCUUC-CUUug -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 163864 | 0.69 | 0.887017 |
Target: 5'- aCGAUC-CGAGa-CCGGAGAGGGAu-- -3' miRNA: 3'- -GCUGGcGCUCgaGGCCUCUUCCUuug -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 150264 | 0.69 | 0.873259 |
Target: 5'- gGAUCGUGGGCUCCGcGuAGAu-GAAACg -3' miRNA: 3'- gCUGGCGCUCGAGGC-C-UCUucCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 135767 | 0.68 | 0.933312 |
Target: 5'- uGGCuCGUGAacgGCaCCGGAGggGGcuGCa -3' miRNA: 3'- gCUG-GCGCU---CGaGGCCUCuuCCuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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