miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 172643 1.01 0.017943
Target:  5'- aCGACCGCGAGC-CCGGAGAAGGAAACu -3'
miRNA:   3'- -GCUGGCGCUCGaGGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 136124 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 136156 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 136188 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 6631 0.76 0.531741
Target:  5'- --uCCGCG-GCUgUCGGAGggGGAGACg -3'
miRNA:   3'- gcuGGCGCuCGA-GGCCUCuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 136220 0.75 0.570657
Target:  5'- gGACCGgGAGCUCgGGGaGAGGAgccgGACa -3'
miRNA:   3'- gCUGGCgCUCGAGgCCUcUUCCU----UUG- -5'
15720 3' -55.4 NC_004065.1 + 65442 0.73 0.689628
Target:  5'- gCGGCCGUGguGGCUCUGGAGcgcGAAGCg -3'
miRNA:   3'- -GCUGGCGC--UCGAGGCCUCuucCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 110190 0.73 0.689628
Target:  5'- gCGGCCGCGAcGCgccgCCGcccgucGAGAGGGAAGa -3'
miRNA:   3'- -GCUGGCGCU-CGa---GGC------CUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 151462 0.73 0.699434
Target:  5'- -cACUGUc-GCUCCGGAGAGGGAGAg -3'
miRNA:   3'- gcUGGCGcuCGAGGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 176054 0.73 0.700412
Target:  5'- -uACCGUGAGCUCgGGGGcucuacgccgucguuAGGAGACa -3'
miRNA:   3'- gcUGGCGCUCGAGgCCUCu--------------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 172083 0.73 0.709186
Target:  5'- gGGCUGUGGGUggaggggCCGGGGGAGGcgGCu -3'
miRNA:   3'- gCUGGCGCUCGa------GGCCUCUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 64879 0.73 0.718875
Target:  5'- gGACCGCGGcGCgcgUCGGAGAAGaGcgGCg -3'
miRNA:   3'- gCUGGCGCU-CGa--GGCCUCUUC-CuuUG- -5'
15720 3' -55.4 NC_004065.1 + 19088 0.72 0.728495
Target:  5'- gGAUCGa-AGcCUCCGGAGAGGuGAAACa -3'
miRNA:   3'- gCUGGCgcUC-GAGGCCUCUUC-CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 206375 0.72 0.738036
Target:  5'- uGACCGCGAGUUCa-GAGAcgcuauAGGAAAa -3'
miRNA:   3'- gCUGGCGCUCGAGgcCUCU------UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 227543 0.72 0.746549
Target:  5'- aGACCGCGA-C-CCGGAGGucuuagaacauauAGGGAACc -3'
miRNA:   3'- gCUGGCGCUcGaGGCCUCU-------------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 57342 0.72 0.74749
Target:  5'- aCGACCGCG-GCUCUGGAaaaagauacGAucGGAGCg -3'
miRNA:   3'- -GCUGGCGCuCGAGGCCU---------CUucCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 101897 0.72 0.74749
Target:  5'- gCGGCUccucCGAGCUgCUGGAGGAGGAuGCu -3'
miRNA:   3'- -GCUGGc---GCUCGA-GGCCUCUUCCUuUG- -5'
15720 3' -55.4 NC_004065.1 + 198873 0.72 0.775242
Target:  5'- cCGGCCGCGGcggugucgauGCccgagUCGGAGAcGGAGACg -3'
miRNA:   3'- -GCUGGCGCU----------CGa----GGCCUCUuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 226197 0.71 0.801904
Target:  5'- aGGgCGCGGGCUCCacGGAGAccucGGAAGa -3'
miRNA:   3'- gCUgGCGCUCGAGG--CCUCUu---CCUUUg -5'
15720 3' -55.4 NC_004065.1 + 26957 0.71 0.810511
Target:  5'- gCGGCCGCGgcgGGCUCCGGAGcucgccaaAAACa -3'
miRNA:   3'- -GCUGGCGC---UCGAGGCCUCuucc----UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.