miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 60540 0.68 0.911951
Target:  5'- -aGCCGaCGaAGCcgCCGGAGAcgacGGAGACg -3'
miRNA:   3'- gcUGGC-GC-UCGa-GGCCUCUu---CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 49396 0.68 0.911951
Target:  5'- aCGuuuuCCGCGGcgaaauccucGUUCCGGAGAcGGAggGACg -3'
miRNA:   3'- -GCu---GGCGCU----------CGAGGCCUCUuCCU--UUG- -5'
15720 3' -55.4 NC_004065.1 + 115854 0.68 0.91763
Target:  5'- cCGGCgGCGcGCUCCucaGAGucccGGGAAGCg -3'
miRNA:   3'- -GCUGgCGCuCGAGGc--CUCu---UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 57732 0.68 0.91763
Target:  5'- -cACCGCGGGCgagaGGAGGggAGGAGAg -3'
miRNA:   3'- gcUGGCGCUCGagg-CCUCU--UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 127225 0.68 0.91763
Target:  5'- gCGGCCGCGAGgaUCGGGcgcgguGgcGGGGAUg -3'
miRNA:   3'- -GCUGGCGCUCgaGGCCU------CuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 59984 0.68 0.91763
Target:  5'- uCGGCC--GAGCagCCGGugauGAAGGAGGCg -3'
miRNA:   3'- -GCUGGcgCUCGa-GGCCu---CUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 133786 0.68 0.91763
Target:  5'- uCGACCaCGAGC-CgGGAGAcgcggAGGAAGa -3'
miRNA:   3'- -GCUGGcGCUCGaGgCCUCU-----UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 192546 0.68 0.919839
Target:  5'- gGuCCGCacagcccugcgggauGAGCUUCGGAGAAGGc--- -3'
miRNA:   3'- gCuGGCG---------------CUCGAGGCCUCUUCCuuug -5'
15720 3' -55.4 NC_004065.1 + 197525 0.68 0.923084
Target:  5'- cCGGCCGCGcGC---GGuAGAAGGGGACg -3'
miRNA:   3'- -GCUGGCGCuCGaggCC-UCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 53478 0.68 0.923084
Target:  5'- aGACCGcCGAGCucUCCGGgaAGAuGGuGACc -3'
miRNA:   3'- gCUGGC-GCUCG--AGGCC--UCUuCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 119609 0.68 0.923084
Target:  5'- gCGGCUGgGAGUUCUGugccGGGAcGGGGAGCg -3'
miRNA:   3'- -GCUGGCgCUCGAGGC----CUCU-UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 191253 0.68 0.923084
Target:  5'- aGACCGUcAGC-CCGGuGu-GGAAACg -3'
miRNA:   3'- gCUGGCGcUCGaGGCCuCuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 187990 0.68 0.928311
Target:  5'- gCGGCCGCGcgcaacauGGCUCgCGGAGGuccgcgacGGuAGACa -3'
miRNA:   3'- -GCUGGCGC--------UCGAG-GCCUCUu-------CC-UUUG- -5'
15720 3' -55.4 NC_004065.1 + 227988 0.68 0.928311
Target:  5'- gGACCGaGAGCcagCCGGAGAGGu---- -3'
miRNA:   3'- gCUGGCgCUCGa--GGCCUCUUCcuuug -5'
15720 3' -55.4 NC_004065.1 + 816 0.68 0.933312
Target:  5'- aCGuACCGC--GCUCCGGAGAAcgucguucacGGAggUg -3'
miRNA:   3'- -GC-UGGCGcuCGAGGCCUCUU----------CCUuuG- -5'
15720 3' -55.4 NC_004065.1 + 135767 0.68 0.933312
Target:  5'- uGGCuCGUGAacgGCaCCGGAGggGGcuGCa -3'
miRNA:   3'- gCUG-GCGCU---CGaGGCCUCuuCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 96887 0.67 0.938087
Target:  5'- gGACCGUggugGAGCUCaCGGucGAAGGcGAUu -3'
miRNA:   3'- gCUGGCG----CUCGAG-GCCu-CUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 156322 0.67 0.938087
Target:  5'- -aGCgGCG-GCggaGGAGGAGGAAGCg -3'
miRNA:   3'- gcUGgCGCuCGaggCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 225710 0.67 0.938087
Target:  5'- aCGACgGgGAGuCUCCuGGAaGGAGGAugagAACg -3'
miRNA:   3'- -GCUGgCgCUC-GAGG-CCU-CUUCCU----UUG- -5'
15720 3' -55.4 NC_004065.1 + 39569 0.67 0.939934
Target:  5'- uCGuCCGCGAGaaccCCGGAGAgauccggcagaucggGGGGGAg -3'
miRNA:   3'- -GCuGGCGCUCga--GGCCUCU---------------UCCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.