miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 43142 0.67 0.946541
Target:  5'- cCGGCCGCGGaagacacGCgcaCGGAcGgcGGGAACg -3'
miRNA:   3'- -GCUGGCGCU-------CGag-GCCU-CuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 143802 0.67 0.946541
Target:  5'- uGACCGUGgucacuccgauacAGCUCgGGGcGAacaaGGGAGGCg -3'
miRNA:   3'- gCUGGCGC-------------UCGAGgCCU-CU----UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 128953 0.67 0.946964
Target:  5'- gCGGgCGCGAGUUCuCGGAGAu---GACu -3'
miRNA:   3'- -GCUgGCGCUCGAG-GCCUCUuccuUUG- -5'
15720 3' -55.4 NC_004065.1 + 192723 0.67 0.946964
Target:  5'- cCGACCGgGGGCUCUuGAGGccgccGAAACu -3'
miRNA:   3'- -GCUGGCgCUCGAGGcCUCUuc---CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 112562 0.67 0.95107
Target:  5'- uGGCgGCGAGCggcCgCGGAGccGGAcGACg -3'
miRNA:   3'- gCUGgCGCUCGa--G-GCCUCuuCCU-UUG- -5'
15720 3' -55.4 NC_004065.1 + 61348 0.67 0.95107
Target:  5'- gCGACC-CGGGCgaagaCGGAGAuGGggGu -3'
miRNA:   3'- -GCUGGcGCUCGag---GCCUCUuCCuuUg -5'
15720 3' -55.4 NC_004065.1 + 184912 0.67 0.95107
Target:  5'- gCGcCCGgGuGGCUCgGGAGcggccGGGAGACg -3'
miRNA:   3'- -GCuGGCgC-UCGAGgCCUCu----UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 143517 0.67 0.954579
Target:  5'- -uGCUGUGAGCagcguccucgacgUCUGG-GAGGGGGACa -3'
miRNA:   3'- gcUGGCGCUCG-------------AGGCCuCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 489 0.67 0.954579
Target:  5'- gGGCCGCGcGCcgcgUCCGcGGGAAGGcggggugAGGCg -3'
miRNA:   3'- gCUGGCGCuCG----AGGC-CUCUUCC-------UUUG- -5'
15720 3' -55.4 NC_004065.1 + 91712 0.67 0.954579
Target:  5'- aCGAuguCCGCGAGCUCCcgcgucuuuuugaGGaAGAAcauccagacggcGGGAGCg -3'
miRNA:   3'- -GCU---GGCGCUCGAGG-------------CC-UCUU------------CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 6 0.67 0.954958
Target:  5'- cCGGCCgucugagugcgcGCGGGCccCCGGGGGgguauuuugaugGGGggGCu -3'
miRNA:   3'- -GCUGG------------CGCUCGa-GGCCUCU------------UCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 68512 0.67 0.954958
Target:  5'- aGGCgGCGGacGCaucucCCGGAGGccgAGGAGGCg -3'
miRNA:   3'- gCUGgCGCU--CGa----GGCCUCU---UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 159508 0.66 0.958631
Target:  5'- gCGcCUGC-AGCUCCGucGAGAAGGgcGCc -3'
miRNA:   3'- -GCuGGCGcUCGAGGC--CUCUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 74892 0.66 0.958631
Target:  5'- cCGACCucguacucGCGGGCg-CGGAgGAAGGcGACg -3'
miRNA:   3'- -GCUGG--------CGCUCGagGCCU-CUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 138338 0.66 0.958631
Target:  5'- uGGCCGCGAugucGCUCUGcGAcAAGGcGACc -3'
miRNA:   3'- gCUGGCGCU----CGAGGC-CUcUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 93772 0.66 0.961756
Target:  5'- aGGCgGCGAGacauCUCCcgucgucGGuGGAGGAGACc -3'
miRNA:   3'- gCUGgCGCUC----GAGG-------CCuCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 195793 0.66 0.962093
Target:  5'- gGACCGCGGGCcCUGcgcuGAAGGGu-- -3'
miRNA:   3'- gCUGGCGCUCGaGGCcu--CUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 141607 0.66 0.962093
Target:  5'- aCGGCgGCGGGCUCCGcugccGgcGGugGCg -3'
miRNA:   3'- -GCUGgCGCUCGAGGCcu---CuuCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 68468 0.66 0.962093
Target:  5'- -aGCCuggGCGAGCUgcugUCGGugaAGAGGGAGACc -3'
miRNA:   3'- gcUGG---CGCUCGA----GGCC---UCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 143932 0.66 0.962093
Target:  5'- uCGACCGUGAGggggGGAGAaaGGGAGAa -3'
miRNA:   3'- -GCUGGCGCUCgaggCCUCU--UCCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.