miRNA display CGI


Results 21 - 40 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 68512 0.67 0.954958
Target:  5'- aGGCgGCGGacGCaucucCCGGAGGccgAGGAGGCg -3'
miRNA:   3'- gCUGgCGCU--CGa----GGCCUCU---UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 6 0.67 0.954958
Target:  5'- cCGGCCgucugagugcgcGCGGGCccCCGGGGGgguauuuugaugGGGggGCu -3'
miRNA:   3'- -GCUGG------------CGCUCGa-GGCCUCU------------UCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 489 0.67 0.954579
Target:  5'- gGGCCGCGcGCcgcgUCCGcGGGAAGGcggggugAGGCg -3'
miRNA:   3'- gCUGGCGCuCG----AGGC-CUCUUCC-------UUUG- -5'
15720 3' -55.4 NC_004065.1 + 91712 0.67 0.954579
Target:  5'- aCGAuguCCGCGAGCUCCcgcgucuuuuugaGGaAGAAcauccagacggcGGGAGCg -3'
miRNA:   3'- -GCU---GGCGCUCGAGG-------------CC-UCUU------------CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 143517 0.67 0.954579
Target:  5'- -uGCUGUGAGCagcguccucgacgUCUGG-GAGGGGGACa -3'
miRNA:   3'- gcUGGCGCUCG-------------AGGCCuCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 61348 0.67 0.95107
Target:  5'- gCGACC-CGGGCgaagaCGGAGAuGGggGu -3'
miRNA:   3'- -GCUGGcGCUCGag---GCCUCUuCCuuUg -5'
15720 3' -55.4 NC_004065.1 + 112562 0.67 0.95107
Target:  5'- uGGCgGCGAGCggcCgCGGAGccGGAcGACg -3'
miRNA:   3'- gCUGgCGCUCGa--G-GCCUCuuCCU-UUG- -5'
15720 3' -55.4 NC_004065.1 + 184912 0.67 0.95107
Target:  5'- gCGcCCGgGuGGCUCgGGAGcggccGGGAGACg -3'
miRNA:   3'- -GCuGGCgC-UCGAGgCCUCu----UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 128953 0.67 0.946964
Target:  5'- gCGGgCGCGAGUUCuCGGAGAu---GACu -3'
miRNA:   3'- -GCUgGCGCUCGAG-GCCUCUuccuUUG- -5'
15720 3' -55.4 NC_004065.1 + 192723 0.67 0.946964
Target:  5'- cCGACCGgGGGCUCUuGAGGccgccGAAACu -3'
miRNA:   3'- -GCUGGCgCUCGAGGcCUCUuc---CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 143802 0.67 0.946541
Target:  5'- uGACCGUGgucacuccgauacAGCUCgGGGcGAacaaGGGAGGCg -3'
miRNA:   3'- gCUGGCGC-------------UCGAGgCCU-CU----UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 43142 0.67 0.946541
Target:  5'- cCGGCCGCGGaagacacGCgcaCGGAcGgcGGGAACg -3'
miRNA:   3'- -GCUGGCGCU-------CGag-GCCU-CuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 39569 0.67 0.939934
Target:  5'- uCGuCCGCGAGaaccCCGGAGAgauccggcagaucggGGGGGAg -3'
miRNA:   3'- -GCuGGCGCUCga--GGCCUCU---------------UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 156322 0.67 0.938087
Target:  5'- -aGCgGCG-GCggaGGAGGAGGAAGCg -3'
miRNA:   3'- gcUGgCGCuCGaggCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 225710 0.67 0.938087
Target:  5'- aCGACgGgGAGuCUCCuGGAaGGAGGAugagAACg -3'
miRNA:   3'- -GCUGgCgCUC-GAGG-CCU-CUUCCU----UUG- -5'
15720 3' -55.4 NC_004065.1 + 96887 0.67 0.938087
Target:  5'- gGACCGUggugGAGCUCaCGGucGAAGGcGAUu -3'
miRNA:   3'- gCUGGCG----CUCGAG-GCCu-CUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 135767 0.68 0.933312
Target:  5'- uGGCuCGUGAacgGCaCCGGAGggGGcuGCa -3'
miRNA:   3'- gCUG-GCGCU---CGaGGCCUCuuCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 816 0.68 0.933312
Target:  5'- aCGuACCGC--GCUCCGGAGAAcgucguucacGGAggUg -3'
miRNA:   3'- -GC-UGGCGcuCGAGGCCUCUU----------CCUuuG- -5'
15720 3' -55.4 NC_004065.1 + 187990 0.68 0.928311
Target:  5'- gCGGCCGCGcgcaacauGGCUCgCGGAGGuccgcgacGGuAGACa -3'
miRNA:   3'- -GCUGGCGC--------UCGAG-GCCUCUu-------CC-UUUG- -5'
15720 3' -55.4 NC_004065.1 + 227988 0.68 0.928311
Target:  5'- gGACCGaGAGCcagCCGGAGAGGu---- -3'
miRNA:   3'- gCUGGCgCUCGa--GGCCUCUUCcuuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.