miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 191253 0.68 0.923084
Target:  5'- aGACCGUcAGC-CCGGuGu-GGAAACg -3'
miRNA:   3'- gCUGGCGcUCGaGGCCuCuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 53478 0.68 0.923084
Target:  5'- aGACCGcCGAGCucUCCGGgaAGAuGGuGACc -3'
miRNA:   3'- gCUGGC-GCUCG--AGGCC--UCUuCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 119609 0.68 0.923084
Target:  5'- gCGGCUGgGAGUUCUGugccGGGAcGGGGAGCg -3'
miRNA:   3'- -GCUGGCgCUCGAGGC----CUCU-UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 197525 0.68 0.923084
Target:  5'- cCGGCCGCGcGC---GGuAGAAGGGGACg -3'
miRNA:   3'- -GCUGGCGCuCGaggCC-UCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 192546 0.68 0.919839
Target:  5'- gGuCCGCacagcccugcgggauGAGCUUCGGAGAAGGc--- -3'
miRNA:   3'- gCuGGCG---------------CUCGAGGCCUCUUCCuuug -5'
15720 3' -55.4 NC_004065.1 + 115854 0.68 0.91763
Target:  5'- cCGGCgGCGcGCUCCucaGAGucccGGGAAGCg -3'
miRNA:   3'- -GCUGgCGCuCGAGGc--CUCu---UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 59984 0.68 0.91763
Target:  5'- uCGGCC--GAGCagCCGGugauGAAGGAGGCg -3'
miRNA:   3'- -GCUGGcgCUCGa-GGCCu---CUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 57732 0.68 0.91763
Target:  5'- -cACCGCGGGCgagaGGAGGggAGGAGAg -3'
miRNA:   3'- gcUGGCGCUCGagg-CCUCU--UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 127225 0.68 0.91763
Target:  5'- gCGGCCGCGAGgaUCGGGcgcgguGgcGGGGAUg -3'
miRNA:   3'- -GCUGGCGCUCgaGGCCU------CuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 133786 0.68 0.91763
Target:  5'- uCGACCaCGAGC-CgGGAGAcgcggAGGAAGa -3'
miRNA:   3'- -GCUGGcGCUCGaGgCCUCU-----UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 49396 0.68 0.911951
Target:  5'- aCGuuuuCCGCGGcgaaauccucGUUCCGGAGAcGGAggGACg -3'
miRNA:   3'- -GCu---GGCGCU----------CGAGGCCUCUuCCU--UUG- -5'
15720 3' -55.4 NC_004065.1 + 60540 0.68 0.911951
Target:  5'- -aGCCGaCGaAGCcgCCGGAGAcgacGGAGACg -3'
miRNA:   3'- gcUGGC-GC-UCGa-GGCCUCUu---CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 184721 0.68 0.906048
Target:  5'- uGGCUGcCGAuGCUgucgaUCGGAGGAGGAAGa -3'
miRNA:   3'- gCUGGC-GCU-CGA-----GGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 130758 0.69 0.9024
Target:  5'- gCGACCGCGAGCaguacaCCGacGAGAGGcuacggcucgacugcGAGACg -3'
miRNA:   3'- -GCUGGCGCUCGa-----GGC--CUCUUC---------------CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 97617 0.69 0.896143
Target:  5'- aCGugUGCGAggagcacauccaggcGUUCuCGGAGAAGGGcGACg -3'
miRNA:   3'- -GCugGCGCU---------------CGAG-GCCUCUUCCU-UUG- -5'
15720 3' -55.4 NC_004065.1 + 91205 0.69 0.893578
Target:  5'- gCGugCGCGgcaucGGCgccgCCGGAGAAGaGAGu- -3'
miRNA:   3'- -GCugGCGC-----UCGa---GGCCUCUUC-CUUug -5'
15720 3' -55.4 NC_004065.1 + 4660 0.69 0.893578
Target:  5'- -cGCCGCGGGCgUCCaGAGAcagAGGAcuccGGCg -3'
miRNA:   3'- gcUGGCGCUCG-AGGcCUCU---UCCU----UUG- -5'
15720 3' -55.4 NC_004065.1 + 163864 0.69 0.887017
Target:  5'- aCGAUC-CGAGa-CCGGAGAGGGAu-- -3'
miRNA:   3'- -GCUGGcGCUCgaGGCCUCUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 142927 0.69 0.880243
Target:  5'- cCGGCCGuCGAGUUCCGGcaccAGGGccAGCu -3'
miRNA:   3'- -GCUGGC-GCUCGAGGCCucu-UCCU--UUG- -5'
15720 3' -55.4 NC_004065.1 + 150264 0.69 0.873259
Target:  5'- gGAUCGUGGGCUCCGcGuAGAu-GAAACg -3'
miRNA:   3'- gCUGGCGCUCGAGGC-C-UCUucCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.