miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 6 0.67 0.954958
Target:  5'- cCGGCCgucugagugcgcGCGGGCccCCGGGGGgguauuuugaugGGGggGCu -3'
miRNA:   3'- -GCUGG------------CGCUCGa-GGCCUCU------------UCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 489 0.67 0.954579
Target:  5'- gGGCCGCGcGCcgcgUCCGcGGGAAGGcggggugAGGCg -3'
miRNA:   3'- gCUGGCGCuCG----AGGC-CUCUUCC-------UUUG- -5'
15720 3' -55.4 NC_004065.1 + 816 0.68 0.933312
Target:  5'- aCGuACCGC--GCUCCGGAGAAcgucguucacGGAggUg -3'
miRNA:   3'- -GC-UGGCGcuCGAGGCCUCUU----------CCUuuG- -5'
15720 3' -55.4 NC_004065.1 + 4660 0.69 0.893578
Target:  5'- -cGCCGCGGGCgUCCaGAGAcagAGGAcuccGGCg -3'
miRNA:   3'- gcUGGCGCUCG-AGGcCUCU---UCCU----UUG- -5'
15720 3' -55.4 NC_004065.1 + 6631 0.76 0.531741
Target:  5'- --uCCGCG-GCUgUCGGAGggGGAGACg -3'
miRNA:   3'- gcuGGCGCuCGA-GGCCUCuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 19088 0.72 0.728495
Target:  5'- gGAUCGa-AGcCUCCGGAGAGGuGAAACa -3'
miRNA:   3'- gCUGGCgcUC-GAGGCCUCUUC-CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 19646 0.66 0.968402
Target:  5'- aGGCUGCGGGCagCCaaGGGAAGGGu-- -3'
miRNA:   3'- gCUGGCGCUCGa-GGc-CUCUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 26957 0.71 0.810511
Target:  5'- gCGGCCGCGgcgGGCUCCGGAGcucgccaaAAACa -3'
miRNA:   3'- -GCUGGCGC---UCGAGGCCUCuucc----UUUG- -5'
15720 3' -55.4 NC_004065.1 + 38964 0.7 0.835384
Target:  5'- cCGGCgCGgGGGUUCUGGuGGAAGGuGACg -3'
miRNA:   3'- -GCUG-GCgCUCGAGGCC-UCUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 39569 0.67 0.939934
Target:  5'- uCGuCCGCGAGaaccCCGGAGAgauccggcagaucggGGGGGAg -3'
miRNA:   3'- -GCuGGCGCUCga--GGCCUCU---------------UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 39758 0.66 0.965032
Target:  5'- gCGACUuuccgcaGCGGcucGgUCCGGGGAAGGAuuguGCu -3'
miRNA:   3'- -GCUGG-------CGCU---CgAGGCCUCUUCCUu---UG- -5'
15720 3' -55.4 NC_004065.1 + 43142 0.67 0.946541
Target:  5'- cCGGCCGCGGaagacacGCgcaCGGAcGgcGGGAACg -3'
miRNA:   3'- -GCUGGCGCU-------CGag-GCCU-CuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 49396 0.68 0.911951
Target:  5'- aCGuuuuCCGCGGcgaaauccucGUUCCGGAGAcGGAggGACg -3'
miRNA:   3'- -GCu---GGCGCU----------CGAGGCCUCUuCCU--UUG- -5'
15720 3' -55.4 NC_004065.1 + 53478 0.68 0.923084
Target:  5'- aGACCGcCGAGCucUCCGGgaAGAuGGuGACc -3'
miRNA:   3'- gCUGGC-GCUCG--AGGCC--UCUuCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 57342 0.72 0.74749
Target:  5'- aCGACCGCG-GCUCUGGAaaaagauacGAucGGAGCg -3'
miRNA:   3'- -GCUGGCGCuCGAGGCCU---------CUucCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 57732 0.68 0.91763
Target:  5'- -cACCGCGGGCgagaGGAGGggAGGAGAg -3'
miRNA:   3'- gcUGGCGCUCGagg-CCUCU--UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 59085 0.7 0.851103
Target:  5'- aGAUCGCGGcGCgCCGGcgaaAGAAGGAcACg -3'
miRNA:   3'- gCUGGCGCU-CGaGGCC----UCUUCCUuUG- -5'
15720 3' -55.4 NC_004065.1 + 59984 0.68 0.91763
Target:  5'- uCGGCC--GAGCagCCGGugauGAAGGAGGCg -3'
miRNA:   3'- -GCUGGcgCUCGa-GGCCu---CUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 60122 0.7 0.843334
Target:  5'- cCGGCCGCGuacaGGCUCUuaGGGAacuuGGGGAACg -3'
miRNA:   3'- -GCUGGCGC----UCGAGGc-CUCU----UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 60540 0.68 0.911951
Target:  5'- -aGCCGaCGaAGCcgCCGGAGAcgacGGAGACg -3'
miRNA:   3'- gcUGGC-GC-UCGa-GGCCUCUu---CCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.