miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 60582 0.7 0.843334
Target:  5'- aGACCGCGgaaGGCgccCCGGAcGAAgaguucGGAAACg -3'
miRNA:   3'- gCUGGCGC---UCGa--GGCCU-CUU------CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 61348 0.67 0.95107
Target:  5'- gCGACC-CGGGCgaagaCGGAGAuGGggGu -3'
miRNA:   3'- -GCUGGcGCUCGag---GCCUCUuCCuuUg -5'
15720 3' -55.4 NC_004065.1 + 64879 0.73 0.718875
Target:  5'- gGACCGCGGcGCgcgUCGGAGAAGaGcgGCg -3'
miRNA:   3'- gCUGGCGCU-CGa--GGCCUCUUC-CuuUG- -5'
15720 3' -55.4 NC_004065.1 + 65442 0.73 0.689628
Target:  5'- gCGGCCGUGguGGCUCUGGAGcgcGAAGCg -3'
miRNA:   3'- -GCUGGCGC--UCGAGGCCUCuucCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 68468 0.66 0.962093
Target:  5'- -aGCCuggGCGAGCUgcugUCGGugaAGAGGGAGACc -3'
miRNA:   3'- gcUGG---CGCUCGA----GGCC---UCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 68512 0.67 0.954958
Target:  5'- aGGCgGCGGacGCaucucCCGGAGGccgAGGAGGCg -3'
miRNA:   3'- gCUGgCGCU--CGa----GGCCUCU---UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 71826 0.66 0.965348
Target:  5'- aCGACauaCGCGAGCUgCUGGuggagagcGGAGGGAu-- -3'
miRNA:   3'- -GCUG---GCGCUCGA-GGCC--------UCUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 74892 0.66 0.958631
Target:  5'- cCGACCucguacucGCGGGCg-CGGAgGAAGGcGACg -3'
miRNA:   3'- -GCUGG--------CGCUCGagGCCU-CUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 75574 0.7 0.827259
Target:  5'- gCGGCCGUGAcguucGUgucgCCGGcGGggGGAGGCc -3'
miRNA:   3'- -GCUGGCGCU-----CGa---GGCC-UCuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 76973 0.7 0.843334
Target:  5'- uCGACCGacucCGGGCgggagacgaugCUGGAGGAGGAGGa -3'
miRNA:   3'- -GCUGGC----GCUCGa----------GGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 77984 0.66 0.965348
Target:  5'- uGGCCGCGGcgagccGCcCCGGGacGGAGGAGc- -3'
miRNA:   3'- gCUGGCGCU------CGaGGCCU--CUUCCUUug -5'
15720 3' -55.4 NC_004065.1 + 83582 0.71 0.810511
Target:  5'- gCGACgGCGGGgaagCCGGGGAAGaAGACg -3'
miRNA:   3'- -GCUGgCGCUCga--GGCCUCUUCcUUUG- -5'
15720 3' -55.4 NC_004065.1 + 91205 0.69 0.893578
Target:  5'- gCGugCGCGgcaucGGCgccgCCGGAGAAGaGAGu- -3'
miRNA:   3'- -GCugGCGC-----UCGa---GGCCUCUUC-CUUug -5'
15720 3' -55.4 NC_004065.1 + 91712 0.67 0.954579
Target:  5'- aCGAuguCCGCGAGCUCCcgcgucuuuuugaGGaAGAAcauccagacggcGGGAGCg -3'
miRNA:   3'- -GCU---GGCGCUCGAGG-------------CC-UCUU------------CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 92033 0.66 0.97126
Target:  5'- gGACCGCGGGCUCUuGGcgcgcucGAGGCa -3'
miRNA:   3'- gCUGGCGCUCGAGG-CCucuuc--CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 93772 0.66 0.961756
Target:  5'- aGGCgGCGAGacauCUCCcgucgucGGuGGAGGAGACc -3'
miRNA:   3'- gCUGgCGCUC----GAGG-------CCuCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 96665 0.66 0.97126
Target:  5'- gCGuCgGCGGGCUCgcccgaCGGAGGaucgugcgggcgAGGGGACg -3'
miRNA:   3'- -GCuGgCGCUCGAG------GCCUCU------------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 96887 0.67 0.938087
Target:  5'- gGACCGUggugGAGCUCaCGGucGAAGGcGAUu -3'
miRNA:   3'- gCUGGCG----CUCGAG-GCCu-CUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 97617 0.69 0.896143
Target:  5'- aCGugUGCGAggagcacauccaggcGUUCuCGGAGAAGGGcGACg -3'
miRNA:   3'- -GCugGCGCU---------------CGAG-GCCUCUUCCU-UUG- -5'
15720 3' -55.4 NC_004065.1 + 98483 0.66 0.973927
Target:  5'- uGGCCGUGuacauguGCUcgCCGGAG-AGGAGu- -3'
miRNA:   3'- gCUGGCGCu------CGA--GGCCUCuUCCUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.