miRNA display CGI


Results 41 - 60 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 101897 0.72 0.74749
Target:  5'- gCGGCUccucCGAGCUgCUGGAGGAGGAuGCu -3'
miRNA:   3'- -GCUGGc---GCUCGA-GGCCUCUUCCUuUG- -5'
15720 3' -55.4 NC_004065.1 + 107330 0.7 0.858684
Target:  5'- aCGGgucCCGUGAGC-UgGGAGAAgGGAGACg -3'
miRNA:   3'- -GCU---GGCGCUCGaGgCCUCUU-CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 110190 0.73 0.689628
Target:  5'- gCGGCCGCGAcGCgccgCCGcccgucGAGAGGGAAGa -3'
miRNA:   3'- -GCUGGCGCU-CGa---GGC------CUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 112562 0.67 0.95107
Target:  5'- uGGCgGCGAGCggcCgCGGAGccGGAcGACg -3'
miRNA:   3'- gCUGgCGCUCGa--G-GCCUCuuCCU-UUG- -5'
15720 3' -55.4 NC_004065.1 + 115854 0.68 0.91763
Target:  5'- cCGGCgGCGcGCUCCucaGAGucccGGGAAGCg -3'
miRNA:   3'- -GCUGgCGCuCGAGGc--CUCu---UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 119609 0.68 0.923084
Target:  5'- gCGGCUGgGAGUUCUGugccGGGAcGGGGAGCg -3'
miRNA:   3'- -GCUGGCgCUCGAGGC----CUCU-UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 127225 0.68 0.91763
Target:  5'- gCGGCCGCGAGgaUCGGGcgcgguGgcGGGGAUg -3'
miRNA:   3'- -GCUGGCGCUCgaGGCCU------CuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 128953 0.67 0.946964
Target:  5'- gCGGgCGCGAGUUCuCGGAGAu---GACu -3'
miRNA:   3'- -GCUgGCGCUCGAG-GCCUCUuccuUUG- -5'
15720 3' -55.4 NC_004065.1 + 130758 0.69 0.9024
Target:  5'- gCGACCGCGAGCaguacaCCGacGAGAGGcuacggcucgacugcGAGACg -3'
miRNA:   3'- -GCUGGCGCUCGa-----GGC--CUCUUC---------------CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 133786 0.68 0.91763
Target:  5'- uCGACCaCGAGC-CgGGAGAcgcggAGGAAGa -3'
miRNA:   3'- -GCUGGcGCUCGaGgCCUCU-----UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 135767 0.68 0.933312
Target:  5'- uGGCuCGUGAacgGCaCCGGAGggGGcuGCa -3'
miRNA:   3'- gCUG-GCGCU---CGaGGCCUCuuCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 136124 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 136156 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 136188 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 136220 0.75 0.570657
Target:  5'- gGACCGgGAGCUCgGGGaGAGGAgccgGACa -3'
miRNA:   3'- gCUGGCgCUCGAGgCCUcUUCCU----UUG- -5'
15720 3' -55.4 NC_004065.1 + 138338 0.66 0.958631
Target:  5'- uGGCCGCGAugucGCUCUGcGAcAAGGcGACc -3'
miRNA:   3'- gCUGGCGCU----CGAGGC-CUcUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 141607 0.66 0.962093
Target:  5'- aCGGCgGCGGGCUCCGcugccGgcGGugGCg -3'
miRNA:   3'- -GCUGgCGCUCGAGGCcu---CuuCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 142556 0.7 0.835384
Target:  5'- cCGGUgGCGGG-UCCGGAGAucuaucGGGAGACg -3'
miRNA:   3'- -GCUGgCGCUCgAGGCCUCU------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 142927 0.69 0.880243
Target:  5'- cCGGCCGuCGAGUUCCGGcaccAGGGccAGCu -3'
miRNA:   3'- -GCUGGC-GCUCGAGGCCucu-UCCU--UUG- -5'
15720 3' -55.4 NC_004065.1 + 143517 0.67 0.954579
Target:  5'- -uGCUGUGAGCagcguccucgacgUCUGG-GAGGGGGACa -3'
miRNA:   3'- gcUGGCGCUCG-------------AGGCCuCUUCCUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.