miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 143802 0.67 0.946541
Target:  5'- uGACCGUGgucacuccgauacAGCUCgGGGcGAacaaGGGAGGCg -3'
miRNA:   3'- gCUGGCGC-------------UCGAGgCCU-CU----UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 143932 0.66 0.962093
Target:  5'- uCGACCGUGAGggggGGAGAaaGGGAGAa -3'
miRNA:   3'- -GCUGGCGCUCgaggCCUCU--UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 144508 0.7 0.843334
Target:  5'- gCGACUuCGGGCgcggcgaCCGGAaaGAAGGAAGCc -3'
miRNA:   3'- -GCUGGcGCUCGa------GGCCU--CUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 145865 0.71 0.818965
Target:  5'- cCGACgGCGucgagauccuuGGCUcCCGGAGAuGGGAGAa -3'
miRNA:   3'- -GCUGgCGC-----------UCGA-GGCCUCU-UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 150264 0.69 0.873259
Target:  5'- gGAUCGUGGGCUCCGcGuAGAu-GAAACg -3'
miRNA:   3'- gCUGGCGCUCGAGGC-C-UCUucCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 151462 0.73 0.699434
Target:  5'- -cACUGUc-GCUCCGGAGAGGGAGAg -3'
miRNA:   3'- gcUGGCGcuCGAGGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 152994 0.66 0.965348
Target:  5'- cCGAuCCGCGccAGCUCCGaGucGAGGucGCa -3'
miRNA:   3'- -GCU-GGCGC--UCGAGGC-CucUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 156322 0.67 0.938087
Target:  5'- -aGCgGCG-GCggaGGAGGAGGAAGCg -3'
miRNA:   3'- gcUGgCGCuCGaggCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 159508 0.66 0.958631
Target:  5'- gCGcCUGC-AGCUCCGucGAGAAGGgcGCc -3'
miRNA:   3'- -GCuGGCGcUCGAGGC--CUCUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 163864 0.69 0.887017
Target:  5'- aCGAUC-CGAGa-CCGGAGAGGGAu-- -3'
miRNA:   3'- -GCUGGcGCUCgaGGCCUCUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 172083 0.73 0.709186
Target:  5'- gGGCUGUGGGUggaggggCCGGGGGAGGcgGCu -3'
miRNA:   3'- gCUGGCGCUCGa------GGCCUCUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 172643 1.01 0.017943
Target:  5'- aCGACCGCGAGC-CCGGAGAAGGAAACu -3'
miRNA:   3'- -GCUGGCGCUCGaGGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 176054 0.73 0.700412
Target:  5'- -uACCGUGAGCUCgGGGGcucuacgccgucguuAGGAGACa -3'
miRNA:   3'- gcUGGCGCUCGAGgCCUCu--------------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 176877 0.66 0.965348
Target:  5'- aCGGcucCCGuCGAgGCUCUGG-GAAGGGAGa -3'
miRNA:   3'- -GCU---GGC-GCU-CGAGGCCuCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 180130 0.66 0.965032
Target:  5'- gGACgGCGGGUUCCGucuGGAGGucgauucGAGCa -3'
miRNA:   3'- gCUGgCGCUCGAGGCcu-CUUCC-------UUUG- -5'
15720 3' -55.4 NC_004065.1 + 184721 0.68 0.906048
Target:  5'- uGGCUGcCGAuGCUgucgaUCGGAGGAGGAAGa -3'
miRNA:   3'- gCUGGC-GCU-CGA-----GGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 184912 0.67 0.95107
Target:  5'- gCGcCCGgGuGGCUCgGGAGcggccGGGAGACg -3'
miRNA:   3'- -GCuGGCgC-UCGAGgCCUCu----UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 187990 0.68 0.928311
Target:  5'- gCGGCCGCGcgcaacauGGCUCgCGGAGGuccgcgacGGuAGACa -3'
miRNA:   3'- -GCUGGCGC--------UCGAG-GCCUCUu-------CC-UUUG- -5'
15720 3' -55.4 NC_004065.1 + 191253 0.68 0.923084
Target:  5'- aGACCGUcAGC-CCGGuGu-GGAAACg -3'
miRNA:   3'- gCUGGCGcUCGaGGCCuCuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 192546 0.68 0.919839
Target:  5'- gGuCCGCacagcccugcgggauGAGCUUCGGAGAAGGc--- -3'
miRNA:   3'- gCuGGCG---------------CUCGAGGCCUCUUCCuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.