miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 227988 0.68 0.928311
Target:  5'- gGACCGaGAGCcagCCGGAGAGGu---- -3'
miRNA:   3'- gCUGGCgCUCGa--GGCCUCUUCcuuug -5'
15720 3' -55.4 NC_004065.1 + 227543 0.72 0.746549
Target:  5'- aGACCGCGA-C-CCGGAGGucuuagaacauauAGGGAACc -3'
miRNA:   3'- gCUGGCGCUcGaGGCCUCU-------------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 226197 0.71 0.801904
Target:  5'- aGGgCGCGGGCUCCacGGAGAccucGGAAGa -3'
miRNA:   3'- gCUgGCGCUCGAGG--CCUCUu---CCUUUg -5'
15720 3' -55.4 NC_004065.1 + 225710 0.67 0.938087
Target:  5'- aCGACgGgGAGuCUCCuGGAaGGAGGAugagAACg -3'
miRNA:   3'- -GCUGgCgCUC-GAGG-CCU-CUUCCU----UUG- -5'
15720 3' -55.4 NC_004065.1 + 206375 0.72 0.738036
Target:  5'- uGACCGCGAGUUCa-GAGAcgcuauAGGAAAa -3'
miRNA:   3'- gCUGGCGCUCGAGgcCUCU------UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 201292 0.66 0.965348
Target:  5'- uGGCCcucCG-GCggCCGGGGGAGGAGGa -3'
miRNA:   3'- gCUGGc--GCuCGa-GGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 198873 0.72 0.775242
Target:  5'- cCGGCCGCGGcggugucgauGCccgagUCGGAGAcGGAGACg -3'
miRNA:   3'- -GCUGGCGCU----------CGa----GGCCUCUuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 197525 0.68 0.923084
Target:  5'- cCGGCCGCGcGC---GGuAGAAGGGGACg -3'
miRNA:   3'- -GCUGGCGCuCGaggCC-UCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 195793 0.66 0.962093
Target:  5'- gGACCGCGGGCcCUGcgcuGAAGGGu-- -3'
miRNA:   3'- gCUGGCGCUCGaGGCcu--CUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 195259 0.7 0.866071
Target:  5'- gCGGCCGCGAucugGC-CCGGc--GGGAAACu -3'
miRNA:   3'- -GCUGGCGCU----CGaGGCCucuUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 192723 0.67 0.946964
Target:  5'- cCGACCGgGGGCUCUuGAGGccgccGAAACu -3'
miRNA:   3'- -GCUGGCgCUCGAGGcCUCUuc---CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 192687 0.66 0.965348
Target:  5'- --uCUGCGGugggcuGCUCCGGAuGAcGGAAGCu -3'
miRNA:   3'- gcuGGCGCU------CGAGGCCU-CUuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 192546 0.68 0.919839
Target:  5'- gGuCCGCacagcccugcgggauGAGCUUCGGAGAAGGc--- -3'
miRNA:   3'- gCuGGCG---------------CUCGAGGCCUCUUCCuuug -5'
15720 3' -55.4 NC_004065.1 + 191253 0.68 0.923084
Target:  5'- aGACCGUcAGC-CCGGuGu-GGAAACg -3'
miRNA:   3'- gCUGGCGcUCGaGGCCuCuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 187990 0.68 0.928311
Target:  5'- gCGGCCGCGcgcaacauGGCUCgCGGAGGuccgcgacGGuAGACa -3'
miRNA:   3'- -GCUGGCGC--------UCGAG-GCCUCUu-------CC-UUUG- -5'
15720 3' -55.4 NC_004065.1 + 184912 0.67 0.95107
Target:  5'- gCGcCCGgGuGGCUCgGGAGcggccGGGAGACg -3'
miRNA:   3'- -GCuGGCgC-UCGAGgCCUCu----UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 184721 0.68 0.906048
Target:  5'- uGGCUGcCGAuGCUgucgaUCGGAGGAGGAAGa -3'
miRNA:   3'- gCUGGC-GCU-CGA-----GGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 180130 0.66 0.965032
Target:  5'- gGACgGCGGGUUCCGucuGGAGGucgauucGAGCa -3'
miRNA:   3'- gCUGgCGCUCGAGGCcu-CUUCC-------UUUG- -5'
15720 3' -55.4 NC_004065.1 + 176877 0.66 0.965348
Target:  5'- aCGGcucCCGuCGAgGCUCUGG-GAAGGGAGa -3'
miRNA:   3'- -GCU---GGC-GCU-CGAGGCCuCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 176054 0.73 0.700412
Target:  5'- -uACCGUGAGCUCgGGGGcucuacgccgucguuAGGAGACa -3'
miRNA:   3'- gcUGGCGCUCGAGgCCUCu--------------UCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.