miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 172643 1.01 0.017943
Target:  5'- aCGACCGCGAGC-CCGGAGAAGGAAACu -3'
miRNA:   3'- -GCUGGCGCUCGaGGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 172083 0.73 0.709186
Target:  5'- gGGCUGUGGGUggaggggCCGGGGGAGGcgGCu -3'
miRNA:   3'- gCUGGCGCUCGa------GGCCUCUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 163864 0.69 0.887017
Target:  5'- aCGAUC-CGAGa-CCGGAGAGGGAu-- -3'
miRNA:   3'- -GCUGGcGCUCgaGGCCUCUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 159508 0.66 0.958631
Target:  5'- gCGcCUGC-AGCUCCGucGAGAAGGgcGCc -3'
miRNA:   3'- -GCuGGCGcUCGAGGC--CUCUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 156322 0.67 0.938087
Target:  5'- -aGCgGCG-GCggaGGAGGAGGAAGCg -3'
miRNA:   3'- gcUGgCGCuCGaggCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 152994 0.66 0.965348
Target:  5'- cCGAuCCGCGccAGCUCCGaGucGAGGucGCa -3'
miRNA:   3'- -GCU-GGCGC--UCGAGGC-CucUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 151462 0.73 0.699434
Target:  5'- -cACUGUc-GCUCCGGAGAGGGAGAg -3'
miRNA:   3'- gcUGGCGcuCGAGGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 150264 0.69 0.873259
Target:  5'- gGAUCGUGGGCUCCGcGuAGAu-GAAACg -3'
miRNA:   3'- gCUGGCGCUCGAGGC-C-UCUucCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 145865 0.71 0.818965
Target:  5'- cCGACgGCGucgagauccuuGGCUcCCGGAGAuGGGAGAa -3'
miRNA:   3'- -GCUGgCGC-----------UCGA-GGCCUCU-UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 144508 0.7 0.843334
Target:  5'- gCGACUuCGGGCgcggcgaCCGGAaaGAAGGAAGCc -3'
miRNA:   3'- -GCUGGcGCUCGa------GGCCU--CUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 143932 0.66 0.962093
Target:  5'- uCGACCGUGAGggggGGAGAaaGGGAGAa -3'
miRNA:   3'- -GCUGGCGCUCgaggCCUCU--UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 143802 0.67 0.946541
Target:  5'- uGACCGUGgucacuccgauacAGCUCgGGGcGAacaaGGGAGGCg -3'
miRNA:   3'- gCUGGCGC-------------UCGAGgCCU-CU----UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 143517 0.67 0.954579
Target:  5'- -uGCUGUGAGCagcguccucgacgUCUGG-GAGGGGGACa -3'
miRNA:   3'- gcUGGCGCUCG-------------AGGCCuCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 142927 0.69 0.880243
Target:  5'- cCGGCCGuCGAGUUCCGGcaccAGGGccAGCu -3'
miRNA:   3'- -GCUGGC-GCUCGAGGCCucu-UCCU--UUG- -5'
15720 3' -55.4 NC_004065.1 + 142556 0.7 0.835384
Target:  5'- cCGGUgGCGGG-UCCGGAGAucuaucGGGAGACg -3'
miRNA:   3'- -GCUGgCGCUCgAGGCCUCU------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 141607 0.66 0.962093
Target:  5'- aCGGCgGCGGGCUCCGcugccGgcGGugGCg -3'
miRNA:   3'- -GCUGgCGCUCGAGGCcu---CuuCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 138338 0.66 0.958631
Target:  5'- uGGCCGCGAugucGCUCUGcGAcAAGGcGACc -3'
miRNA:   3'- gCUGGCGCU----CGAGGC-CUcUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 136220 0.75 0.570657
Target:  5'- gGACCGgGAGCUCgGGGaGAGGAgccgGACa -3'
miRNA:   3'- gCUGGCgCUCGAGgCCUcUUCCU----UUG- -5'
15720 3' -55.4 NC_004065.1 + 136188 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 136156 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.