miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 136124 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 135767 0.68 0.933312
Target:  5'- uGGCuCGUGAacgGCaCCGGAGggGGcuGCa -3'
miRNA:   3'- gCUG-GCGCU---CGaGGCCUCuuCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 133786 0.68 0.91763
Target:  5'- uCGACCaCGAGC-CgGGAGAcgcggAGGAAGa -3'
miRNA:   3'- -GCUGGcGCUCGaGgCCUCU-----UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 130758 0.69 0.9024
Target:  5'- gCGACCGCGAGCaguacaCCGacGAGAGGcuacggcucgacugcGAGACg -3'
miRNA:   3'- -GCUGGCGCUCGa-----GGC--CUCUUC---------------CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 128953 0.67 0.946964
Target:  5'- gCGGgCGCGAGUUCuCGGAGAu---GACu -3'
miRNA:   3'- -GCUgGCGCUCGAG-GCCUCUuccuUUG- -5'
15720 3' -55.4 NC_004065.1 + 127225 0.68 0.91763
Target:  5'- gCGGCCGCGAGgaUCGGGcgcgguGgcGGGGAUg -3'
miRNA:   3'- -GCUGGCGCUCgaGGCCU------CuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 119609 0.68 0.923084
Target:  5'- gCGGCUGgGAGUUCUGugccGGGAcGGGGAGCg -3'
miRNA:   3'- -GCUGGCgCUCGAGGC----CUCU-UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 115854 0.68 0.91763
Target:  5'- cCGGCgGCGcGCUCCucaGAGucccGGGAAGCg -3'
miRNA:   3'- -GCUGgCGCuCGAGGc--CUCu---UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 112562 0.67 0.95107
Target:  5'- uGGCgGCGAGCggcCgCGGAGccGGAcGACg -3'
miRNA:   3'- gCUGgCGCUCGa--G-GCCUCuuCCU-UUG- -5'
15720 3' -55.4 NC_004065.1 + 110190 0.73 0.689628
Target:  5'- gCGGCCGCGAcGCgccgCCGcccgucGAGAGGGAAGa -3'
miRNA:   3'- -GCUGGCGCU-CGa---GGC------CUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 107330 0.7 0.858684
Target:  5'- aCGGgucCCGUGAGC-UgGGAGAAgGGAGACg -3'
miRNA:   3'- -GCU---GGCGCUCGaGgCCUCUU-CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 101897 0.72 0.74749
Target:  5'- gCGGCUccucCGAGCUgCUGGAGGAGGAuGCu -3'
miRNA:   3'- -GCUGGc---GCUCGA-GGCCUCUUCCUuUG- -5'
15720 3' -55.4 NC_004065.1 + 98483 0.66 0.973927
Target:  5'- uGGCCGUGuacauguGCUcgCCGGAG-AGGAGu- -3'
miRNA:   3'- gCUGGCGCu------CGA--GGCCUCuUCCUUug -5'
15720 3' -55.4 NC_004065.1 + 97617 0.69 0.896143
Target:  5'- aCGugUGCGAggagcacauccaggcGUUCuCGGAGAAGGGcGACg -3'
miRNA:   3'- -GCugGCGCU---------------CGAG-GCCUCUUCCU-UUG- -5'
15720 3' -55.4 NC_004065.1 + 96887 0.67 0.938087
Target:  5'- gGACCGUggugGAGCUCaCGGucGAAGGcGAUu -3'
miRNA:   3'- gCUGGCG----CUCGAG-GCCu-CUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 96665 0.66 0.97126
Target:  5'- gCGuCgGCGGGCUCgcccgaCGGAGGaucgugcgggcgAGGGGACg -3'
miRNA:   3'- -GCuGgCGCUCGAG------GCCUCU------------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 93772 0.66 0.961756
Target:  5'- aGGCgGCGAGacauCUCCcgucgucGGuGGAGGAGACc -3'
miRNA:   3'- gCUGgCGCUC----GAGG-------CCuCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 92033 0.66 0.97126
Target:  5'- gGACCGCGGGCUCUuGGcgcgcucGAGGCa -3'
miRNA:   3'- gCUGGCGCUCGAGG-CCucuuc--CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 91712 0.67 0.954579
Target:  5'- aCGAuguCCGCGAGCUCCcgcgucuuuuugaGGaAGAAcauccagacggcGGGAGCg -3'
miRNA:   3'- -GCU---GGCGCUCGAGG-------------CC-UCUU------------CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 91205 0.69 0.893578
Target:  5'- gCGugCGCGgcaucGGCgccgCCGGAGAAGaGAGu- -3'
miRNA:   3'- -GCugGCGC-----UCGa---GGCCUCUUC-CUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.