miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 60540 0.68 0.911951
Target:  5'- -aGCCGaCGaAGCcgCCGGAGAcgacGGAGACg -3'
miRNA:   3'- gcUGGC-GC-UCGa-GGCCUCUu---CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 59085 0.7 0.851103
Target:  5'- aGAUCGCGGcGCgCCGGcgaaAGAAGGAcACg -3'
miRNA:   3'- gCUGGCGCU-CGaGGCC----UCUUCCUuUG- -5'
15720 3' -55.4 NC_004065.1 + 195259 0.7 0.866071
Target:  5'- gCGGCCGCGAucugGC-CCGGc--GGGAAACu -3'
miRNA:   3'- -GCUGGCGCU----CGaGGCCucuUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 150264 0.69 0.873259
Target:  5'- gGAUCGUGGGCUCCGcGuAGAu-GAAACg -3'
miRNA:   3'- gCUGGCGCUCGAGGC-C-UCUucCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 142927 0.69 0.880243
Target:  5'- cCGGCCGuCGAGUUCCGGcaccAGGGccAGCu -3'
miRNA:   3'- -GCUGGC-GCUCGAGGCCucu-UCCU--UUG- -5'
15720 3' -55.4 NC_004065.1 + 163864 0.69 0.887017
Target:  5'- aCGAUC-CGAGa-CCGGAGAGGGAu-- -3'
miRNA:   3'- -GCUGGcGCUCgaGGCCUCUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 91205 0.69 0.893578
Target:  5'- gCGugCGCGgcaucGGCgccgCCGGAGAAGaGAGu- -3'
miRNA:   3'- -GCugGCGC-----UCGa---GGCCUCUUC-CUUug -5'
15720 3' -55.4 NC_004065.1 + 130758 0.69 0.9024
Target:  5'- gCGACCGCGAGCaguacaCCGacGAGAGGcuacggcucgacugcGAGACg -3'
miRNA:   3'- -GCUGGCGCUCGa-----GGC--CUCUUC---------------CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 49396 0.68 0.911951
Target:  5'- aCGuuuuCCGCGGcgaaauccucGUUCCGGAGAcGGAggGACg -3'
miRNA:   3'- -GCu---GGCGCU----------CGAGGCCUCUuCCU--UUG- -5'
15720 3' -55.4 NC_004065.1 + 60122 0.7 0.843334
Target:  5'- cCGGCCGCGuacaGGCUCUuaGGGAacuuGGGGAACg -3'
miRNA:   3'- -GCUGGCGC----UCGAGGc-CUCU----UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 76973 0.7 0.843334
Target:  5'- uCGACCGacucCGGGCgggagacgaugCUGGAGGAGGAGGa -3'
miRNA:   3'- -GCUGGC----GCUCGa----------GGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 75574 0.7 0.827259
Target:  5'- gCGGCCGUGAcguucGUgucgCCGGcGGggGGAGGCc -3'
miRNA:   3'- -GCUGGCGCU-----CGa---GGCC-UCuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 64879 0.73 0.718875
Target:  5'- gGACCGCGGcGCgcgUCGGAGAAGaGcgGCg -3'
miRNA:   3'- gCUGGCGCU-CGa--GGCCUCUUC-CuuUG- -5'
15720 3' -55.4 NC_004065.1 + 206375 0.72 0.738036
Target:  5'- uGACCGCGAGUUCa-GAGAcgcuauAGGAAAa -3'
miRNA:   3'- gCUGGCGCUCGAGgcCUCU------UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 227543 0.72 0.746549
Target:  5'- aGACCGCGA-C-CCGGAGGucuuagaacauauAGGGAACc -3'
miRNA:   3'- gCUGGCGCUcGaGGCCUCU-------------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 101897 0.72 0.74749
Target:  5'- gCGGCUccucCGAGCUgCUGGAGGAGGAuGCu -3'
miRNA:   3'- -GCUGGc---GCUCGA-GGCCUCUUCCUuUG- -5'
15720 3' -55.4 NC_004065.1 + 57342 0.72 0.74749
Target:  5'- aCGACCGCG-GCUCUGGAaaaagauacGAucGGAGCg -3'
miRNA:   3'- -GCUGGCGCuCGAGGCCU---------CUucCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 226197 0.71 0.801904
Target:  5'- aGGgCGCGGGCUCCacGGAGAccucGGAAGa -3'
miRNA:   3'- gCUgGCGCUCGAGG--CCUCUu---CCUUUg -5'
15720 3' -55.4 NC_004065.1 + 26957 0.71 0.810511
Target:  5'- gCGGCCGCGgcgGGCUCCGGAGcucgccaaAAACa -3'
miRNA:   3'- -GCUGGCGC---UCGAGGCCUCuucc----UUUG- -5'
15720 3' -55.4 NC_004065.1 + 145865 0.71 0.818965
Target:  5'- cCGACgGCGucgagauccuuGGCUcCCGGAGAuGGGAGAa -3'
miRNA:   3'- -GCUGgCGC-----------UCGA-GGCCUCU-UCCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.