Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15720 | 3' | -55.4 | NC_004065.1 | + | 195259 | 0.7 | 0.866071 |
Target: 5'- gCGGCCGCGAucugGC-CCGGc--GGGAAACu -3' miRNA: 3'- -GCUGGCGCU----CGaGGCCucuUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 53478 | 0.68 | 0.923084 |
Target: 5'- aGACCGcCGAGCucUCCGGgaAGAuGGuGACc -3' miRNA: 3'- gCUGGC-GCUCG--AGGCC--UCUuCCuUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 127225 | 0.68 | 0.91763 |
Target: 5'- gCGGCCGCGAGgaUCGGGcgcgguGgcGGGGAUg -3' miRNA: 3'- -GCUGGCGCUCgaGGCCU------CuuCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 57732 | 0.68 | 0.91763 |
Target: 5'- -cACCGCGGGCgagaGGAGGggAGGAGAg -3' miRNA: 3'- gcUGGCGCUCGagg-CCUCU--UCCUUUg -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 59984 | 0.68 | 0.91763 |
Target: 5'- uCGGCC--GAGCagCCGGugauGAAGGAGGCg -3' miRNA: 3'- -GCUGGcgCUCGa-GGCCu---CUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 60540 | 0.68 | 0.911951 |
Target: 5'- -aGCCGaCGaAGCcgCCGGAGAcgacGGAGACg -3' miRNA: 3'- gcUGGC-GC-UCGa-GGCCUCUu---CCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 49396 | 0.68 | 0.911951 |
Target: 5'- aCGuuuuCCGCGGcgaaauccucGUUCCGGAGAcGGAggGACg -3' miRNA: 3'- -GCu---GGCGCU----------CGAGGCCUCUuCCU--UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 130758 | 0.69 | 0.9024 |
Target: 5'- gCGACCGCGAGCaguacaCCGacGAGAGGcuacggcucgacugcGAGACg -3' miRNA: 3'- -GCUGGCGCUCGa-----GGC--CUCUUC---------------CUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 91205 | 0.69 | 0.893578 |
Target: 5'- gCGugCGCGgcaucGGCgccgCCGGAGAAGaGAGu- -3' miRNA: 3'- -GCugGCGC-----UCGa---GGCCUCUUC-CUUug -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 163864 | 0.69 | 0.887017 |
Target: 5'- aCGAUC-CGAGa-CCGGAGAGGGAu-- -3' miRNA: 3'- -GCUGGcGCUCgaGGCCUCUUCCUuug -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 142927 | 0.69 | 0.880243 |
Target: 5'- cCGGCCGuCGAGUUCCGGcaccAGGGccAGCu -3' miRNA: 3'- -GCUGGC-GCUCGAGGCCucu-UCCU--UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 150264 | 0.69 | 0.873259 |
Target: 5'- gGAUCGUGGGCUCCGcGuAGAu-GAAACg -3' miRNA: 3'- gCUGGCGCUCGAGGC-C-UCUucCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 151462 | 0.73 | 0.699434 |
Target: 5'- -cACUGUc-GCUCCGGAGAGGGAGAg -3' miRNA: 3'- gcUGGCGcuCGAGGCCUCUUCCUUUg -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 65442 | 0.73 | 0.689628 |
Target: 5'- gCGGCCGUGguGGCUCUGGAGcgcGAAGCg -3' miRNA: 3'- -GCUGGCGC--UCGAGGCCUCuucCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 136220 | 0.75 | 0.570657 |
Target: 5'- gGACCGgGAGCUCgGGGaGAGGAgccgGACa -3' miRNA: 3'- gCUGGCgCUCGAGgCCUcUUCCU----UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 6631 | 0.76 | 0.531741 |
Target: 5'- --uCCGCG-GCUgUCGGAGggGGAGACg -3' miRNA: 3'- gcuGGCGCuCGA-GGCCUCuuCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 136188 | 0.85 | 0.169472 |
Target: 5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3' miRNA: 3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 136156 | 0.85 | 0.169472 |
Target: 5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3' miRNA: 3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 136124 | 0.85 | 0.169472 |
Target: 5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3' miRNA: 3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 98483 | 0.66 | 0.973927 |
Target: 5'- uGGCCGUGuacauguGCUcgCCGGAG-AGGAGu- -3' miRNA: 3'- gCUGGCGCu------CGA--GGCCUCuUCCUUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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