Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15720 | 3' | -55.4 | NC_004065.1 | + | 191253 | 0.68 | 0.923084 |
Target: 5'- aGACCGUcAGC-CCGGuGu-GGAAACg -3' miRNA: 3'- gCUGGCGcUCGaGGCCuCuuCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 816 | 0.68 | 0.933312 |
Target: 5'- aCGuACCGC--GCUCCGGAGAAcgucguucacGGAggUg -3' miRNA: 3'- -GC-UGGCGcuCGAGGCCUCUU----------CCUuuG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 156322 | 0.67 | 0.938087 |
Target: 5'- -aGCgGCG-GCggaGGAGGAGGAAGCg -3' miRNA: 3'- gcUGgCGCuCGaggCCUCUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 192723 | 0.67 | 0.946964 |
Target: 5'- cCGACCGgGGGCUCUuGAGGccgccGAAACu -3' miRNA: 3'- -GCUGGCgCUCGAGGcCUCUuc---CUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 112562 | 0.67 | 0.95107 |
Target: 5'- uGGCgGCGAGCggcCgCGGAGccGGAcGACg -3' miRNA: 3'- gCUGgCGCUCGa--G-GCCUCuuCCU-UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 60582 | 0.7 | 0.843334 |
Target: 5'- aGACCGCGgaaGGCgccCCGGAcGAAgaguucGGAAACg -3' miRNA: 3'- gCUGGCGC---UCGa--GGCCU-CUU------CCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 142556 | 0.7 | 0.835384 |
Target: 5'- cCGGUgGCGGG-UCCGGAGAucuaucGGGAGACg -3' miRNA: 3'- -GCUGgCGCUCgAGGCCUCU------UCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 38964 | 0.7 | 0.835384 |
Target: 5'- cCGGCgCGgGGGUUCUGGuGGAAGGuGACg -3' miRNA: 3'- -GCUG-GCgCUCGAGGCC-UCUUCCuUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 136124 | 0.85 | 0.169472 |
Target: 5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3' miRNA: 3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 136156 | 0.85 | 0.169472 |
Target: 5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3' miRNA: 3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 136188 | 0.85 | 0.169472 |
Target: 5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3' miRNA: 3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 6631 | 0.76 | 0.531741 |
Target: 5'- --uCCGCG-GCUgUCGGAGggGGAGACg -3' miRNA: 3'- gcuGGCGCuCGA-GGCCUCuuCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 136220 | 0.75 | 0.570657 |
Target: 5'- gGACCGgGAGCUCgGGGaGAGGAgccgGACa -3' miRNA: 3'- gCUGGCgCUCGAGgCCUcUUCCU----UUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 65442 | 0.73 | 0.689628 |
Target: 5'- gCGGCCGUGguGGCUCUGGAGcgcGAAGCg -3' miRNA: 3'- -GCUGGCGC--UCGAGGCCUCuucCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 151462 | 0.73 | 0.699434 |
Target: 5'- -cACUGUc-GCUCCGGAGAGGGAGAg -3' miRNA: 3'- gcUGGCGcuCGAGGCCUCUUCCUUUg -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 176054 | 0.73 | 0.700412 |
Target: 5'- -uACCGUGAGCUCgGGGGcucuacgccgucguuAGGAGACa -3' miRNA: 3'- gcUGGCGCUCGAGgCCUCu--------------UCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 172083 | 0.73 | 0.709186 |
Target: 5'- gGGCUGUGGGUggaggggCCGGGGGAGGcgGCu -3' miRNA: 3'- gCUGGCGCUCGa------GGCCUCUUCCuuUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 19088 | 0.72 | 0.728495 |
Target: 5'- gGAUCGa-AGcCUCCGGAGAGGuGAAACa -3' miRNA: 3'- gCUGGCgcUC-GAGGCCUCUUC-CUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 198873 | 0.72 | 0.775242 |
Target: 5'- cCGGCCGCGGcggugucgauGCccgagUCGGAGAcGGAGACg -3' miRNA: 3'- -GCUGGCGCU----------CGa----GGCCUCUuCCUUUG- -5' |
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15720 | 3' | -55.4 | NC_004065.1 | + | 83582 | 0.71 | 0.810511 |
Target: 5'- gCGACgGCGGGgaagCCGGGGAAGaAGACg -3' miRNA: 3'- -GCUGgCGCUCga--GGCCUCUUCcUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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