miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 97617 0.69 0.896143
Target:  5'- aCGugUGCGAggagcacauccaggcGUUCuCGGAGAAGGGcGACg -3'
miRNA:   3'- -GCugGCGCU---------------CGAG-GCCUCUUCCU-UUG- -5'
15720 3' -55.4 NC_004065.1 + 136188 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 141607 0.66 0.962093
Target:  5'- aCGGCgGCGGGCUCCGcugccGgcGGugGCg -3'
miRNA:   3'- -GCUGgCGCUCGAGGCcu---CuuCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 192723 0.67 0.946964
Target:  5'- cCGACCGgGGGCUCUuGAGGccgccGAAACu -3'
miRNA:   3'- -GCUGGCgCUCGAGGcCUCUuc---CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 107330 0.7 0.858684
Target:  5'- aCGGgucCCGUGAGC-UgGGAGAAgGGAGACg -3'
miRNA:   3'- -GCU---GGCGCUCGaGgCCUCUU-CCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 136156 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 156322 0.67 0.938087
Target:  5'- -aGCgGCG-GCggaGGAGGAGGAAGCg -3'
miRNA:   3'- gcUGgCGCuCGaggCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 136124 0.85 0.169472
Target:  5'- gGACCGgGAGCU-CGGGGAGGGAAGCc -3'
miRNA:   3'- gCUGGCgCUCGAgGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 172643 1.01 0.017943
Target:  5'- aCGACCGCGAGC-CCGGAGAAGGAAACu -3'
miRNA:   3'- -GCUGGCGCUCGaGGCCUCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 19088 0.72 0.728495
Target:  5'- gGAUCGa-AGcCUCCGGAGAGGuGAAACa -3'
miRNA:   3'- gCUGGCgcUC-GAGGCCUCUUC-CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 4660 0.69 0.893578
Target:  5'- -cGCCGCGGGCgUCCaGAGAcagAGGAcuccGGCg -3'
miRNA:   3'- gcUGGCGCUCG-AGGcCUCU---UCCU----UUG- -5'
15720 3' -55.4 NC_004065.1 + 192546 0.68 0.919839
Target:  5'- gGuCCGCacagcccugcgggauGAGCUUCGGAGAAGGc--- -3'
miRNA:   3'- gCuGGCG---------------CUCGAGGCCUCUUCCuuug -5'
15720 3' -55.4 NC_004065.1 + 142556 0.7 0.835384
Target:  5'- cCGGUgGCGGG-UCCGGAGAucuaucGGGAGACg -3'
miRNA:   3'- -GCUGgCGCUCgAGGCCUCU------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 198873 0.72 0.775242
Target:  5'- cCGGCCGCGGcggugucgauGCccgagUCGGAGAcGGAGACg -3'
miRNA:   3'- -GCUGGCGCU----------CGa----GGCCUCUuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 151462 0.73 0.699434
Target:  5'- -cACUGUc-GCUCCGGAGAGGGAGAg -3'
miRNA:   3'- gcUGGCGcuCGAGGCCUCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 6631 0.76 0.531741
Target:  5'- --uCCGCG-GCUgUCGGAGggGGAGACg -3'
miRNA:   3'- gcuGGCGCuCGA-GGCCUCuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 152994 0.66 0.965348
Target:  5'- cCGAuCCGCGccAGCUCCGaGucGAGGucGCa -3'
miRNA:   3'- -GCU-GGCGC--UCGAGGC-CucUUCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 180130 0.66 0.965032
Target:  5'- gGACgGCGGGUUCCGucuGGAGGucgauucGAGCa -3'
miRNA:   3'- gCUGgCGCUCGAGGCcu-CUUCC-------UUUG- -5'
15720 3' -55.4 NC_004065.1 + 138338 0.66 0.958631
Target:  5'- uGGCCGCGAugucGCUCUGcGAcAAGGcGACc -3'
miRNA:   3'- gCUGGCGCU----CGAGGC-CUcUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 112562 0.67 0.95107
Target:  5'- uGGCgGCGAGCggcCgCGGAGccGGAcGACg -3'
miRNA:   3'- gCUGgCGCUCGa--G-GCCUCuuCCU-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.