miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15720 3' -55.4 NC_004065.1 + 92033 0.66 0.97126
Target:  5'- gGACCGCGGGCUCUuGGcgcgcucGAGGCa -3'
miRNA:   3'- gCUGGCGCUCGAGG-CCucuuc--CUUUG- -5'
15720 3' -55.4 NC_004065.1 + 96665 0.66 0.97126
Target:  5'- gCGuCgGCGGGCUCgcccgaCGGAGGaucgugcgggcgAGGGGACg -3'
miRNA:   3'- -GCuGgCGCUCGAG------GCCUCU------------UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 226197 0.71 0.801904
Target:  5'- aGGgCGCGGGCUCCacGGAGAccucGGAAGa -3'
miRNA:   3'- gCUgGCGCUCGAGG--CCUCUu---CCUUUg -5'
15720 3' -55.4 NC_004065.1 + 96887 0.67 0.938087
Target:  5'- gGACCGUggugGAGCUCaCGGucGAAGGcGAUu -3'
miRNA:   3'- gCUGGCG----CUCGAG-GCCu-CUUCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 57342 0.72 0.74749
Target:  5'- aCGACCGCG-GCUCUGGAaaaagauacGAucGGAGCg -3'
miRNA:   3'- -GCUGGCGCuCGAGGCCU---------CUucCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 53478 0.68 0.923084
Target:  5'- aGACCGcCGAGCucUCCGGgaAGAuGGuGACc -3'
miRNA:   3'- gCUGGC-GCUCG--AGGCC--UCUuCCuUUG- -5'
15720 3' -55.4 NC_004065.1 + 206375 0.72 0.738036
Target:  5'- uGACCGCGAGUUCa-GAGAcgcuauAGGAAAa -3'
miRNA:   3'- gCUGGCGCUCGAGgcCUCU------UCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 19646 0.66 0.968402
Target:  5'- aGGCUGCGGGCagCCaaGGGAAGGGu-- -3'
miRNA:   3'- gCUGGCGCUCGa-GGc-CUCUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 176877 0.66 0.965348
Target:  5'- aCGGcucCCGuCGAgGCUCUGG-GAAGGGAGa -3'
miRNA:   3'- -GCU---GGC-GCU-CGAGGCCuCUUCCUUUg -5'
15720 3' -55.4 NC_004065.1 + 71826 0.66 0.965348
Target:  5'- aCGACauaCGCGAGCUgCUGGuggagagcGGAGGGAu-- -3'
miRNA:   3'- -GCUG---GCGCUCGA-GGCC--------UCUUCCUuug -5'
15720 3' -55.4 NC_004065.1 + 119609 0.68 0.923084
Target:  5'- gCGGCUGgGAGUUCUGugccGGGAcGGGGAGCg -3'
miRNA:   3'- -GCUGGCgCUCGAGGC----CUCU-UCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 197525 0.68 0.923084
Target:  5'- cCGGCCGCGcGC---GGuAGAAGGGGACg -3'
miRNA:   3'- -GCUGGCGCuCGaggCC-UCUUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 227988 0.68 0.928311
Target:  5'- gGACCGaGAGCcagCCGGAGAGGu---- -3'
miRNA:   3'- gCUGGCgCUCGa--GGCCUCUUCcuuug -5'
15720 3' -55.4 NC_004065.1 + 187990 0.68 0.928311
Target:  5'- gCGGCCGCGcgcaacauGGCUCgCGGAGGuccgcgacGGuAGACa -3'
miRNA:   3'- -GCUGGCGC--------UCGAG-GCCUCUu-------CC-UUUG- -5'
15720 3' -55.4 NC_004065.1 + 135767 0.68 0.933312
Target:  5'- uGGCuCGUGAacgGCaCCGGAGggGGcuGCa -3'
miRNA:   3'- gCUG-GCGCU---CGaGGCCUCuuCCuuUG- -5'
15720 3' -55.4 NC_004065.1 + 127225 0.68 0.91763
Target:  5'- gCGGCCGCGAGgaUCGGGcgcgguGgcGGGGAUg -3'
miRNA:   3'- -GCUGGCGCUCgaGGCCU------CuuCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 150264 0.69 0.873259
Target:  5'- gGAUCGUGGGCUCCGcGuAGAu-GAAACg -3'
miRNA:   3'- gCUGGCGCUCGAGGC-C-UCUucCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 195259 0.7 0.866071
Target:  5'- gCGGCCGCGAucugGC-CCGGc--GGGAAACu -3'
miRNA:   3'- -GCUGGCGCU----CGaGGCCucuUCCUUUG- -5'
15720 3' -55.4 NC_004065.1 + 59085 0.7 0.851103
Target:  5'- aGAUCGCGGcGCgCCGGcgaaAGAAGGAcACg -3'
miRNA:   3'- gCUGGCGCU-CGaGGCC----UCUUCCUuUG- -5'
15720 3' -55.4 NC_004065.1 + 60122 0.7 0.843334
Target:  5'- cCGGCCGCGuacaGGCUCUuaGGGAacuuGGGGAACg -3'
miRNA:   3'- -GCUGGCGC----UCGAGGc-CUCU----UCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.