miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15721 3' -49.1 NC_004065.1 + 158022 0.65 0.99982
Target:  5'- ---cGAGAAguccagcAGGCUCACCuCCAggGCa -3'
miRNA:   3'- caaaCUCUU-------UUCGAGUGGuGGUggCG- -5'
15721 3' -49.1 NC_004065.1 + 115987 0.65 0.99982
Target:  5'- ---cGaAGAGgcGCUCGuCCGCCgacgugcGCCGCg -3'
miRNA:   3'- caaaC-UCUUuuCGAGU-GGUGG-------UGGCG- -5'
15721 3' -49.1 NC_004065.1 + 119836 0.66 0.999776
Target:  5'- ---cGGGcggcGGCgcgUCGCgGCCGCCGCa -3'
miRNA:   3'- caaaCUCuuu-UCG---AGUGgUGGUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 194791 0.66 0.999776
Target:  5'- ---cGuAGAAAAGCUgcuugGCUACCGCUGUa -3'
miRNA:   3'- caaaC-UCUUUUCGAg----UGGUGGUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 154621 0.66 0.999776
Target:  5'- --gUGAGcucuucGGGGGCgUCuGCCAgCACCGCg -3'
miRNA:   3'- caaACUC------UUUUCG-AG-UGGUgGUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 80308 0.66 0.999776
Target:  5'- --aUGAGuccGAGGGC-CGgCGCgGCCGCg -3'
miRNA:   3'- caaACUC---UUUUCGaGUgGUGgUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 107847 0.66 0.999776
Target:  5'- -----cGAGGAGCUCAacaaACuCACCGCc -3'
miRNA:   3'- caaacuCUUUUCGAGUgg--UG-GUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 100009 0.66 0.999776
Target:  5'- ---------uAGC-CGCCGCCGCCGUa -3'
miRNA:   3'- caaacucuuuUCGaGUGGUGGUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 88660 0.66 0.999776
Target:  5'- ---cGAGucGAGCgcCGCCAgCACcCGCg -3'
miRNA:   3'- caaaCUCuuUUCGa-GUGGUgGUG-GCG- -5'
15721 3' -49.1 NC_004065.1 + 175965 0.66 0.999776
Target:  5'- --gUGAGAAGA--UUGCCGCUcCCGCg -3'
miRNA:   3'- caaACUCUUUUcgAGUGGUGGuGGCG- -5'
15721 3' -49.1 NC_004065.1 + 25463 0.66 0.999776
Target:  5'- ---aGAGAgcAGAcGCgcagCACCucCCGCCGCc -3'
miRNA:   3'- caaaCUCU--UUU-CGa---GUGGu-GGUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 122956 0.66 0.999776
Target:  5'- ---cGAGGAugcAGCUCACCGaaaaaCAcaaacCCGCa -3'
miRNA:   3'- caaaCUCUUu--UCGAGUGGUg----GU-----GGCG- -5'
15721 3' -49.1 NC_004065.1 + 202622 0.66 0.999776
Target:  5'- --aUGAGGAGucgacgacgauGC-CGCCGCUGCUGCu -3'
miRNA:   3'- caaACUCUUUu----------CGaGUGGUGGUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 212596 0.66 0.999776
Target:  5'- ----cAGAGAGGC-CGCCaaACgACCGCu -3'
miRNA:   3'- caaacUCUUUUCGaGUGG--UGgUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 212482 0.66 0.999716
Target:  5'- ---aGGGGAacGAGCgCGCCAaaucgcCCGCUGCg -3'
miRNA:   3'- caaaCUCUU--UUCGaGUGGU------GGUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 164591 0.66 0.999716
Target:  5'- -------cAGAGC-CACCACgGCCGCc -3'
miRNA:   3'- caaacucuUUUCGaGUGGUGgUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 149237 0.66 0.999716
Target:  5'- ----------cGC-CGCCGCCGCCGCc -3'
miRNA:   3'- caaacucuuuuCGaGUGGUGGUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 88408 0.66 0.999716
Target:  5'- --------cGAGC-CGCCACCGCCGg -3'
miRNA:   3'- caaacucuuUUCGaGUGGUGGUGGCg -5'
15721 3' -49.1 NC_004065.1 + 65643 0.66 0.999716
Target:  5'- --cUGAcGGAcccGCUgcCGCUGCCGCCGCa -3'
miRNA:   3'- caaACU-CUUuu-CGA--GUGGUGGUGGCG- -5'
15721 3' -49.1 NC_004065.1 + 125901 0.66 0.999716
Target:  5'- ---cGAGGAuccGCUCGCCAUgGCgaaGCa -3'
miRNA:   3'- caaaCUCUUuu-CGAGUGGUGgUGg--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.