miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15723 5' -58.8 NC_004065.1 + 191439 0.65 0.905266
Target:  5'- gCUCGGUgacgaccGAGGAGUCC-UCGacgccgagGUGCGGc -3'
miRNA:   3'- -GAGUCG-------CUCCUCGGGaAGCa-------CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 48864 0.66 0.899873
Target:  5'- uUUAGgGAGGAcg---UCGUGCGCGGu -3'
miRNA:   3'- gAGUCgCUCCUcgggaAGCACGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 179575 0.66 0.893683
Target:  5'- gCUgGGCGcugaAGGGGCgCCacgCGUGUGCGa -3'
miRNA:   3'- -GAgUCGC----UCCUCG-GGaa-GCACGCGCc -5'
15723 5' -58.8 NC_004065.1 + 211152 0.66 0.893683
Target:  5'- uUCGGgGGGGAGCggg-CGUGC-CGGg -3'
miRNA:   3'- gAGUCgCUCCUCGggaaGCACGcGCC- -5'
15723 5' -58.8 NC_004065.1 + 90499 0.66 0.893052
Target:  5'- -gCGGCGAGGugccgcagaaguaGGCCaggUgGUGCGgGGa -3'
miRNA:   3'- gaGUCGCUCC-------------UCGGga-AgCACGCgCC- -5'
15723 5' -58.8 NC_004065.1 + 133982 0.66 0.887286
Target:  5'- aUCGGCGGccGGGGCCCgugcccaCGcaCGCGGg -3'
miRNA:   3'- gAGUCGCU--CCUCGGGaa-----GCacGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 138295 0.66 0.887286
Target:  5'- -aCAGgGAGGccguggacgcGGCCCUgaucgCGUGCGaGGc -3'
miRNA:   3'- gaGUCgCUCC----------UCGGGAa----GCACGCgCC- -5'
15723 5' -58.8 NC_004065.1 + 111143 0.66 0.887286
Target:  5'- uCUCGGUGgagaccgccaucGGaGAGCUgcgCUUCGUGuCGCGGu -3'
miRNA:   3'- -GAGUCGC------------UC-CUCGG---GAAGCAC-GCGCC- -5'
15723 5' -58.8 NC_004065.1 + 168159 0.66 0.887286
Target:  5'- gUCAGCa---GGCCCUUCc-GCGCGGg -3'
miRNA:   3'- gAGUCGcuccUCGGGAAGcaCGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 1852 0.66 0.880687
Target:  5'- aUCAGCGAGc-GUCCUcuguUCGcccaGCGCGGu -3'
miRNA:   3'- gAGUCGCUCcuCGGGA----AGCa---CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 66526 0.66 0.880687
Target:  5'- gCUguGCGuGGAGCgCCUgCGcuucaaccGCGCGGc -3'
miRNA:   3'- -GAguCGCuCCUCG-GGAaGCa-------CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 109843 0.66 0.880687
Target:  5'- -gCGGCGGGGGGCCaucgCGcagGUGcCGGg -3'
miRNA:   3'- gaGUCGCUCCUCGGgaa-GCa--CGC-GCC- -5'
15723 5' -58.8 NC_004065.1 + 112619 0.66 0.880687
Target:  5'- aCUCcGCGccgcGAGCCCagCGcGCGCGGc -3'
miRNA:   3'- -GAGuCGCuc--CUCGGGaaGCaCGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 165893 0.67 0.866894
Target:  5'- -cCAGCggGAGGAgaaGCCCUUUcUGCGcCGGc -3'
miRNA:   3'- gaGUCG--CUCCU---CGGGAAGcACGC-GCC- -5'
15723 5' -58.8 NC_004065.1 + 131290 0.67 0.866894
Target:  5'- --aAGCGGGGGGU--UUCcUGCGCGGa -3'
miRNA:   3'- gagUCGCUCCUCGggAAGcACGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 125746 0.67 0.85971
Target:  5'- cCUCAGacAGG-GCCCggcgUCGUGUaucGCGGg -3'
miRNA:   3'- -GAGUCgcUCCuCGGGa---AGCACG---CGCC- -5'
15723 5' -58.8 NC_004065.1 + 154606 0.67 0.85971
Target:  5'- uUCGGCGGGucauccguGAGCUCUUCGgggGCGUc- -3'
miRNA:   3'- gAGUCGCUC--------CUCGGGAAGCa--CGCGcc -5'
15723 5' -58.8 NC_004065.1 + 24969 0.67 0.858981
Target:  5'- gUCGGuCGuGGgugggcgucccucGGCCUUUUGUGUGUGGg -3'
miRNA:   3'- gAGUC-GCuCC-------------UCGGGAAGCACGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 151689 0.67 0.85234
Target:  5'- -cCAGCGcGGGcGCCCUgcaUCGUcuGCGuCGGg -3'
miRNA:   3'- gaGUCGCuCCU-CGGGA---AGCA--CGC-GCC- -5'
15723 5' -58.8 NC_004065.1 + 153183 0.67 0.844026
Target:  5'- gUCAGCGAGGgaucccaGGCCCUguacaucgCGaGCGCc- -3'
miRNA:   3'- gAGUCGCUCC-------UCGGGAa-------GCaCGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.